Schema for xenoRefFlat
  Database: vicPac2    Primary Table: xenoRefFlat    Row Count: 343,007   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName T25B9.9varchar(255) values Name of gene as it appears in genome browser.
name NM_069597varchar(255) values Name of gene
chrom ABRR02261120varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 1int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 430int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 1int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 430int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 1,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 430,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      vicPac2.xenoRefGene.name (via xenoRefFlat.name)
      vicPac2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
T25B9.9NM_069597ABRR02261120+1430143011,430,
Adamtsl3NM_001190374KB632445-49186075939349378075939335491860,491936,492158,492922,492962,493134,493774,494566,502717,504332,511218,535394,542915,543217,543496,553103,564296,564587,56 ...491911,492104,492221,492950,493124,493149,493882,494767,502922,504522,511402,535539,543143,543475,543967,553254,564476,564780,56 ...
INTS7NM_001199809KB632447-3397336347144333983503471220253397336,3397481,3397605,3397692,3397719,3398102,3398350,3401723,3403320,3409259,3413912,3414996,3415658,3422728,3423995,3425780, ...3397406,3397535,3397670,3397700,3397917,3398144,3398572,3401909,3403419,3409392,3413981,3415100,3415853,3422935,3424133,3426020, ...
Zfp597NM_153732KB632880-1199621351011996213510311996,88536,213366,12179,88641,213510,
socs9NM_001122926KB632686-8244358254078244358254073824435,825092,825290,824936,825242,825407,
NFYANM_001194727KB632465-6276920630185062796896295916246276920,6277087,6277563,6277687,6277772,6278001,6278230,6278410,6278531,6278636,6278772,6279002,6279245,6279407,6282231,6283111, ...6276986,6277383,6277620,6277763,6277944,6278132,6278397,6278510,6278609,6278688,6278976,6279231,6279380,6279743,6282333,6283285, ...
GmipNM_001107308KB632448+145658381457387414565838145738741814565838,14566576,14566914,14567127,14567301,14567844,14568008,14568270,14568751,14569256,14569439,14570049,14570196,14570570,14 ...14565926,14566611,14567045,14567192,14567405,14567929,14568176,14568408,14568931,14569280,14569521,14570124,14570351,14570752,14 ...
CLEC10ANM_001330070KB632821+6877936905266878916905269687793,688567,688976,689548,689738,689806,690123,690150,690362,687928,688661,689072,689626,689805,689880,690136,690225,690526,
MIR302CNR_049445KB632580+7028937029607029607029601702893,702960,
PTAR1NM_001206857KB632529+602274760619256022753606192596022747,6022773,6030858,6039714,6048256,6050205,6059320,6061582,6061697,6022773,6022824,6031028,6039781,6048361,6050419,6059625,6061616,6061925,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.