Schema for xenoRefFlat
  Database: xenLae2    Primary Table: xenoRefFlat    Row Count: 196,785   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName abhd14bvarchar(255) values Name of gene as it appears in genome browser.
name NM_001017276varchar(255) values Name of gene
chrom chr4Lvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 121890037int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 121895667int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 121892696int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 121895563int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 121890037,121892677,1218936...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 121890140,121892908,1218938...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      xenLae2.xenoRefGene.name (via xenoRefFlat.name)
      xenLae2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
abhd14bNM_001017276chr4L+1218900371218956671218926961218955634121890037,121892677,121893654,121895380,121890140,121892908,121893898,121895667,
kqt-3NM_001267476chr3L-461834246345454618342463454584618342,4631629,4632281,4632699,4632716,4633645,4634228,4634428,4618441,4631725,4632391,4632701,4632856,4633744,4634255,4634545,
h2az1NM_001005097chr1L+68079341680830226807934168082613968079341,68079763,68081322,68082159,68082551,68082808,68082881,68082925,68082976,68079420,68079770,68081429,68082289,68082775,68082844,68082892,68082954,68083022,
OR4D5NM_001194427chr1L+1407217371407225261407217371407225262140721737,140722313,140722193,140722526,
MECRNM_001244082chr2L+80934413809491568093441380949156780934413,80934558,80934923,80935227,80936244,80942050,80949114,80934471,80934690,80935067,80935331,80936322,80942122,80949156,
Atad2NM_027435chr6S-11717338811720506711717338811720506721117173388,117177307,117178149,117178749,117182089,117183482,117191488,117192607,117192814,117193466,117194316,117194490,11719762 ...117173430,117177432,117178306,117178950,117182236,117183668,117191769,117192698,117192821,117193621,117194403,117194658,11719762 ...
OR12D3NM_001194208chr5S+1342440431342935061342440431342935064134244043,134292912,134293299,134293437,134244133,134293008,134293356,134293506,
CRHR2NM_001883chr9_10L-685830868644076858308686440796858308,6858930,6859142,6860671,6861813,6862208,6862295,6862505,6864305,6858446,6858975,6859278,6860757,6861885,6862212,6862351,6862662,6864407,
Rab3aNM_009001chr1L+1013430101013555961013430111013555964101343010,101353232,101354865,101355405,101343239,101353351,101354990,101355596,
tmem41bNM_001079987chr4S-18367725183731821836773418373182718367725,18368043,18371114,18371995,18372443,18372611,18373080,18367904,18368182,18371219,18372089,18372566,18372614,18373182,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.