Schema for intronEst
  Database: xenTro1    Primary Table: intronEst    Row Count: 745,333   Data last updated: 2016-04-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 511int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 37int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 1int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 104int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AL866986varchar(255) Query sequence name
qSize 549int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 549int(10) unsigned Alignment end position in query
tName scaffold_1varchar(255) Target sequence name
tSize 7608560int(10) unsigned Target sequence size
tStart 4238int(10) unsigned Alignment start position in target
tEnd 4890int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 93,342,69,44,longblob Size of each block
qStarts 0,94,436,505,longblob Start of each block in query.
tStarts 4238,4331,4674,4846,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      xenTro1.all_est.qName (via intronEst.qName)
      xenTro1.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5855110370112104-AL8669865490549scaffold_1760856042384890493,342,69,44,0,94,436,505,4238,4331,4674,4846,
58550201270002812-AL87028264718647scaffold_17608560435157923392,139,98,0,392,531,4351,4846,5694,
58550001270002812-AL88369864518645scaffold_17608560435357923390,139,98,0,390,529,4353,4846,5694,
585523012700031376-AL9712336500650scaffold_17608560439564214348,139,96,67,0,348,487,583,4395,4846,5694,6354,
585370312247109822-AL6542135090509scaffold_17608560444157621578,6,6,149,10,6,6,9,6,20,117,20,40,6,20,0,78,84,91,241,253,262,269,279,286,306,423,443,483,489,4441,4520,4527,4536,4685,4695,4702,4708,4717,4723,4846,4964,5694,5735,5742,
58548601270002812-AL6582456130613scaffold_17608560463160563112,139,362,0,112,251,4631,4846,5694,
58542001270002812-AL7785485470547scaffold_1760856046976056346,139,362,0,46,185,4697,4846,5694,
585434012611152825-AL64319057311573scaffold_1760856047288114715,139,96,90,132,78,11,0,15,154,250,340,472,551,4728,4846,5694,6354,6675,8025,8103,
5856480000074276-AL6378776480648scaffold_17608560570510629885,90,132,85,128,50,54,24,0,85,175,307,392,520,570,624,5705,6354,6675,8025,9510,10101,10550,10605,
5855700000064275-AL6774835700570scaffold_17608560574910594741,90,132,85,128,50,44,0,41,131,263,348,476,526,5749,6354,6675,8025,9510,10101,10550,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.