Schema for xenoRefFlat
  Database: allMis1    Primary Table: xenoRefFlat    Row Count: 425,570   Data last updated: 2020-08-17
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName krt5varchar(255) values Name of gene as it appears in genome browser.
name NM_001124352varchar(255) values Name of gene
chrom JH738090varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 144456int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 154651int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 144456int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 154651int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 144456,146221,147809,149197...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 144669,146378,147904,149258...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        allMis1.xenoMrna.qName (via xenoRefFlat.name)
      allMis1.xenoRefGene.name (via xenoRefFlat.name)
      allMis1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
krt5NM_001124352JH738090-1444561546511444561546516144456,146221,147809,149197,153451,154483,144669,146378,147904,149258,153660,154651,
mlrbNM_001141827JH732814-2612182623582612212623582261218,262268,261318,262358,
SLCO1B3NM_001166047JH734673+22372022122372022192237,2462,7494,10652,12006,15982,16976,18866,20116,2376,2593,7645,10778,12087,16096,17150,18929,20221,
Frem1NM_001191757JH734167+278338276278338276162783,5496,5752,6351,7054,8804,10142,16748,22222,23278,24640,28981,30938,37098,38082,38198,2875,5725,5797,6468,7372,8808,10250,16880,22567,23421,24835,29065,31112,37348,38186,38276,
mat2a.LNM_001086706JH737703-2070692141642071232141649207069,208713,209285,209821,210605,210843,211495,211722,214085,207226,208847,209468,210040,210749,210958,211616,211800,214164,
SHHNM_001310462JH733506-62621681376262168137262621,68116,62895,68137,
Pex5lNM_001310460JH733122+31211409493121140949731211,32232,33836,35670,36639,37157,40747,31329,32376,33907,35854,36798,37309,40949,
PigyNM_001271975JH735446+5499465501655499465501621549946,550165,
PCDH15NM_001142770AKHW01066967-122214441222144411222,1444,
PCDH15NM_001142770JH738555-8828214771289955147712988282,89955,92045,92080,109993,110045,117840,124966,147641,88393,90007,92077,92119,109999,110074,118061,125143,147712,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.