Schema for all_mrna
  Database: anoCar1    Primary Table: all_mrna    Row Count: 231   Data last updated: 2019-05-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 82smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1263int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 29int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 81689int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF095911varchar(255) values Query sequence name
qSize 1302int(10) unsigned range Query sequence size
qStart 5int(10) unsigned range Alignment start position in query
qEnd 1302int(10) unsigned range Alignment end position in query
tName scaffold_0varchar(255) values Target sequence name
tSize 16654889int(10) unsigned range Target sequence size
tStart 10214736int(10) unsigned range Alignment start position in target
tEnd 10297722int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 485,184,134,139,333,22,longblob   Size of each block
qStarts 0,485,669,803,942,1275,longblob   Start of each block in query.
tStarts 10214736,10221278,10225524,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        anoCar1.mrnaOrientInfo.name (via all_mrna.qName)
      anoCar1.xenoMrna.qName (via all_mrna.qName)
      anoCar1.xenoRefGene.name (via all_mrna.qName)
      anoCar1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
821263529000581689-AF095911130251302scaffold_01665488910214736102977226485,184,134,139,333,22,0,485,669,803,942,1275,10214736,10221278,10225524,10232838,10271734,10297700,
62867712200067303+FJ8535997020700scaffold_10926095457549295762932766,32,114,94,90,120,184,0,66,98,212,306,396,516,5754929,5756945,5758155,5759129,5762254,5762492,5762748,
5863881000028430-EU4196463890389scaffold_1088221934137767146586355,38,296,0,55,93,137767,142155,146290,
58638423000210784-EU4196473890389scaffold_1088221934137767148940355,38,296,0,55,93,137767,142155,148644,
58638513000210784-EU4196483890389scaffold_1088221934137767148940355,35,299,0,55,90,137767,142155,148641,
58638153000213432-EU4196493901390scaffold_1088221934137767151588355,35,299,0,55,90,137767,142155,151289,
58638513000213432-EU4196503890389scaffold_1088221934137767151588355,38,296,0,55,93,137767,142155,151292,
58638453000213429-EU4196513920392scaffold_1088221934137767151588355,37,300,0,55,92,137767,142155,151288,
58638063000213432-EU4196523890389scaffold_1088221934137767151588355,38,296,0,55,93,137767,140746,151292,
58638513000222633-EU4196533890389scaffold_1088221934137767160789355,38,296,0,55,93,137767,142155,160493,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.