Schema for xenoRefFlat
  Database: anoCar1    Primary Table: xenoRefFlat    Row Count: 436,133   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName W09H1.3varchar(255) values Name of gene as it appears in genome browser.
name NM_064397varchar(255) values Name of gene
chrom scaffold_474varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 476893int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 477124int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 477124int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 477124int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 476893,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 477124,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        anoCar1.xenoMrna.qName (via xenoRefFlat.name)
      anoCar1.xenoRefGene.name (via xenoRefFlat.name)
      anoCar1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
W09H1.3NM_064397scaffold_474+4768934771244771244771241476893,477124,
chn1.LNM_001092444scaffold_697+51678751785167875178251678,75097,51735,75178,
Add1NM_001102444scaffold_879+14337418001614337417613315143374,145068,148114,148309,150217,152975,155958,156253,156656,159724,163011,165033,170890,176097,179851,143530,145231,148266,148311,150292,153129,156102,156354,156831,160069,163113,165123,171034,176133,180016,
CYSLTR2NM_001308471scaffold_147+5136725137815137815137812513672,513733,513705,513781,
CYSLTR2NM_001308471scaffold_131-253694825371492536948253714912536948,2537149,
CYSLTR2NM_001308471scaffold_74-7645067650627650627650624764506,764803,764862,765032,764547,764850,764904,765062,
CYSLTR2NM_001308470scaffold_131-253694825371492536948253714912536948,2537149,
Larp7NM_138593scaffold_64+2866257288809128662572888091112866257,2866965,2867167,2867439,2869265,2870627,2873601,2875031,2880131,2887487,2887998,2866375,2867066,2867251,2867443,2869426,2870711,2873709,2875033,2880198,2887583,2888091,
Zfp69NM_001005788scaffold_936+2716814694827168146948527168,27315,27471,146813,146897,27285,27336,27549,146852,146948,
Zfp455NM_173314scaffold_401-734852128768773485212876876734852,822569,1042472,1090103,1286925,1287600,734954,822686,1042492,1090160,1287096,1287687,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.