Schema for estOrientInfo
  Database: anoGam1    Primary Table: estOrientInfo    Row Count: 157,886   Data last updated: 2016-06-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 25637int(10) unsigned range Start position in chromosome
chromEnd 25883int(10) unsigned range End position in chromosome
name BX603513varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        anoGam1.all_est.qName (via estOrientInfo.name)
      anoGam1.est.qName (via estOrientInfo.name)
      anoGam1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr2L2563725883BX60351300000
585chr2L2642027171CD745558001180
811chr3L2964735729648022BX62001800000
944chr2L4715803147158676BX62334300000
586chr2L144812145393BM59883300000
753chr2L2205728522057946BM61484900000
889chr2R3988706939887357AJ283082003600
950chr2L4792540847925980AL69311501000
707chr2R1604308916043557BM61435900000
586chr2L223899226078BM61518940000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.