Schema for all_mrna
  Database: anoGam3    Primary Table: all_mrna    Row Count: 66,300   Data last updated: 2018-04-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 805int(10) unsigned range Number of bases that match that aren't repeats
misMatches 8int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 56int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BX047830varchar(255) values Query sequence name
qSize 872int(10) unsigned range Query sequence size
qStart 59int(10) unsigned range Alignment start position in query
qEnd 872int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 49364325int(10) unsigned range Target sequence size
tStart 203780int(10) unsigned range Alignment start position in target
tEnd 204649int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 144,669,longblob   Size of each block
qStarts 59,203,longblob   Start of each block in query.
tStarts 203780,203980,longblob   Start of each block in target.

Connected Tables and Joining Fields
        anoGam3.all_est.qName (via all_mrna.qName)
      anoGam3.mrnaOrientInfo.name (via all_mrna.qName)
      anoGam3.xenoMrna.qName (via all_mrna.qName)
      anoGam3.xenoRefGene.name (via all_mrna.qName)
      anoGam3.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58680580000156+BX04783087259872chr2L493643252037802046492144,669,59,203,203780,203980,
58685060000459-BX0478319088864chr2L49364325203780204695548,95,246,459,8,44,92,187,433,892,203780,203829,203980,204227,204687,
58678730022358+BX0529687942794chr2L493643252037982046466126,120,139,311,4,90,2,128,249,388,699,704,203798,203980,204100,204240,204552,204556,
58682730000459-BX0529698300830chr2L493643252038062046955118,246,12,446,8,0,118,364,376,822,203806,203980,204227,204240,204687,
58610269001111+BX036016104591045chr2L493643252042342052703317,415,303,9,326,742,204234,204552,204967,
5869636002223+BX02363199120991chr2L493643252042392052114149,161,415,244,20,170,331,747,204239,204390,204552,204967,
58698714001100-BX0360171020181020chr2L493643252042842052852683,318,0,684,204284,204967,
58687517002513-BX02363291215912chr2L493643252043912052863387,186,319,0,391,578,204391,204781,204967,
586936300226648+BX0438309410941chr2L4936432520789320948094,55,189,41,145,334,3,160,8,0,4,59,248,290,435,769,773,933,207893,207898,208392,208638,208679,208896,209231,209234,209472,
586962000144214-BX0438319701967chr2L49364325208779209955545,498,42,298,79,3,48,546,592,890,208779,208896,209472,209518,209876,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.