Schema for mrnaOrientInfo
  Database: aplCal1    Primary Table: mrnaOrientInfo    Row Count: 861   Data last updated: 2019-03-26
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrMvarchar(255) values Reference sequence chromosome or scaffold
chromStart 92int(10) unsigned range Start position in chromosome
chromEnd 1583int(10) unsigned range End position in chromosome
name EZ114783varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        aplCal1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrM921583EZ11478300000
585chrM45515905EZ11466400000
585chrM63467439EZ114648060016
585chrM75998254EZ11472900109
585chrM87538896EZ11454900100
585chrM87539429EZ11455300000
585chrM1097812161EZ11469800000
585chrM1227313018EZ11474700000
585chrM1339614105EZ11453500000
589scaffold_0543905551228HM05452830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.