Schema for xenoRefFlat
  Database: balAcu1    Primary Table: xenoRefFlat    Row Count: 469,047   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Serpinb12varchar(255) values Name of gene as it appears in genome browser.
name NM_001199213varchar(255) values Name of gene
chrom KI538308varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 8421534int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 8431212int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 8421552int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 8430935int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 7int(10) unsigned range Number of exons
exonStarts 8421534,8423908,8424749,842...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 8421717,8423963,8424857,842...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        balAcu1.xenoRefGene.name (via xenoRefFlat.name)
      balAcu1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Serpinb12NM_001199213KI538308+842153484312128421552843093578421534,8423908,8424749,8426349,8427959,8430530,8431163,8421717,8423963,8424857,8426437,8428101,8430935,8431212,
Slc38a3NM_001199218KI537319-1178059118443711788601184422231178059,1178172,1178219,1178322,1178636,1178671,1178734,1178786,1178821,1179053,1180097,1180338,1180692,1181065,1181226,1181554, ...1178161,1178193,1178237,1178338,1178649,1178698,1178767,1178811,1178965,1179157,1180242,1180463,1180793,1181145,1181391,1181615, ...
vangl2NM_001032310KI537424-213124521397592131245213961282131245,2132323,2135194,2135843,2136747,2139284,2139541,2139684,2131506,2132555,2135330,2135980,2137355,2139396,2139642,2139759,
PakapNM_001384150KI537971-13986291342291342291342813986,14096,15450,16056,17649,289287,290985,291318,14002,14106,15470,16069,17663,289319,290996,291342,
PakapNM_001384157KI537971-13986291342291342291342813986,14096,15450,16056,17649,289287,290985,291318,14002,14106,15470,16069,17663,289319,290996,291342,
VN2R566NM_001099553KI537327+181560018156901815600181569011815600,1815690,
VN2R566NM_001099553KI537371+1349951355201349951355202134995,135133,135070,135520,
SRRM1NM_001366598KI538574+522991656373775637377563737755229916,5230954,5231095,5636162,5637356,5229940,5230961,5231116,5636179,5637377,
znf1174NM_001083098KI538041+921830392183879218303921838719218303,9218387,
Kif1aNM_008440KI537358-2254277238262922542772382629412254277,2254605,2256773,2257923,2259285,2259516,2261662,2262552,2271381,2272162,2277066,2278928,2281697,2282086,2282527,2283536, ...2254397,2254791,2256847,2257959,2259327,2259663,2261783,2262668,2271468,2272228,2277156,2279019,2281792,2282149,2282597,2283538, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.