Schema for xenoMrna
  Database: bosTau6    Primary Table: xenoMrna    Row Count: 6,793,657   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 447int(10) unsigned Number of bases that match that aren't repeats
misMatches 182int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 157int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 117658int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName BT072421varchar(255) Query sequence name
qSize 2088int(10) unsigned Query sequence size
qStart 561int(10) unsigned Alignment start position in query
qEnd 1347int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 158337067int(10) unsigned Target sequence size
tStart 20714int(10) unsigned Alignment start position in target
tEnd 139001int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 127,127,171,159,45,longblob Size of each block
qStarts 561,688,935,1106,1302,longblob Start of each block in query.
tStarts 158198066,158199108,1582010...longblob Start of each block in target.

Connected Tables and Joining Fields
        bosTau6.all_est.qName (via xenoMrna.qName)
      bosTau6.all_mrna.qName (via xenoMrna.qName)
      bosTau6.refGene.name (via xenoMrna.qName)
      bosTau6.refSeqAli.qName (via xenoMrna.qName)
      bosTau6.xenoRefFlat.name (via xenoMrna.qName)
      bosTau6.xenoRefGene.name (via xenoMrna.qName)
      bosTau6.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
734471820021574117658+-BT07242120885611347chr1158337067207141390015127,127,171,159,45,561,688,935,1106,1302,158198066,158199108,158201080,158212056,158316308,
1125222220031063185+-JV658642140010481398chr31214304057087002570870454484,94,30,36,1048,1145,1330,1362,50559951,50560043,50560219,50560344,
585265500041634155++DQ83434784028506chr11583370672072921199551,90,57,60,57,28,120,233,305,449,20729,20813,20922,20997,21142,
58549900002682++EZ3168432063492chr11583370675257453314333,10,15,34,67,77,52574,52884,53299,
58571614000333122+-AB463970100157946chr115833706766190670684229,256,150,221,57,287,546,725,158269999,158270228,158270484,158270656,
58571614000333122+-BC148515104882971chr115833706766190670684229,256,150,221,82,312,571,750,158269999,158270228,158270484,158270656,
58571614000333122+-BC153112104882971chr115833706766190670684229,256,150,221,82,312,571,750,158269999,158270228,158270484,158270656,
73410140005992631203+-AK04652235023791921chr11583370671072311389847110,121,31,12,69,153,54,379,489,674,748,826,904,1867,158198083,158199108,158199862,158201153,158201170,158212053,158229782,
5858319000000++AF3082935671103chr11583370671229111230131102,1,122911,
7377813200611241014756+-AK092733233522036chr11583370671232311388971123,126,106,182,221,27,11,23,11,132,48,2,25,151,258,440,661,699,714,1403,1533,1988,158198170,158199108,158199803,158201066,158212053,158212528,158212584,158212603,158213021,158213421,158213788,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.