Schema for all_est
  Database: caeRem2    Primary Table: all_est    Row Count: 22,296   Data last updated: 2016-05-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 790smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 314int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName DN911454varchar(255) values Query sequence name
qSize 314int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 314int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 161944676int(10) unsigned range Target sequence size
tStart 26892713int(10) unsigned range Alignment start position in target
tEnd 26893027int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 314,longblob   Size of each block
qStarts 0,longblob   Start of each block in query.
tStarts 26892713,longblob   Start of each block in target.

Connected Tables and Joining Fields
        caeRem2.all_mrna.qName (via all_est.qName)
      caeRem2.estOrientInfo.name (via all_est.qName)
      caeRem2.intronEst.qName (via all_est.qName)
      caeRem2.xenoMrna.qName (via all_est.qName)
      caeRem2.xenoRefGene.name (via all_est.qName)
      caeRem2.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7903140000000+DN9114543140314chrUn16194467626892713268930271314,0,26892713,
8694930000000-DN1727794930493chrUn16194467637271464372719571493,0,37271464,
13527120001121371+DN9562137152715chrUn1619446761006258511006279344122,104,100,386,2,125,229,329,100625851,100625973,100626212,100627548,
585763180066352+DR40821184840827chrUn161944676178631869610114,183,401,6,21,18,9,12,10,7,40,154,338,740,747,768,786,796,809,820,17863,18027,18210,18611,18617,18639,18658,18667,18679,18689,
58568126003125101+DR7762257515724chrUn16194467618448192567313,287,53,22,6,9,17,5,318,605,665,689,695,707,18448,18806,19142,19200,19223,19230,19239,
5857639001113-DR7790307870773chrUn1619446766610266877216,756,14,31,66102,66121,
58583560012247-DR7803678542845chrUn1619446766626967157418,37,756,30,9,29,66,822,66269,66287,66325,67127,
58577280012348-DR7802297842784chrUn1619446766680867636415,14,242,509,0,15,31,273,66808,66824,66839,67127,
585829140010185110-DR4090908631862chrUn1619446766735268305134,5,6,14,17,5,22,9,380,103,184,71,23,1,6,12,20,36,54,60,83,93,475,578,762,839,67352,67356,67361,67367,67382,67399,67404,67426,67435,67816,67968,68203,68282,
5853492000234103-DR4063333907379chrUn1619446766778968261526,103,184,13,43,11,39,142,326,340,67789,67816,67968,68203,68218,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.