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Database: calJac4 Primary Table: all_mrna Row Count: 1,610 Data last updated: 2020-09-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 634 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 59 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
| strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | MF191410 | varchar(255) | values | Query sequence name |
| qSize | 59 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 59 | int(10) unsigned | range | Alignment end position in query |
| tName | chr1 | varchar(255) | values | Target sequence name |
| tSize | 217961735 | int(10) unsigned | range | Target sequence size |
| tStart | 6468068 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 6468127 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 59, | longblob | | Size of each block |
| qStarts | 0, | longblob | | Start of each block in query. |
| tStarts | 6468068, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 634 | 59 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191410 | 59 | 0 | 59 | chr1 | 217961735 | 6468068 | 6468127 | 1 | 59, | 0, | 6468068, |
| 634 | 58 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191409 | 58 | 0 | 58 | chr1 | 217961735 | 6468355 | 6468413 | 1 | 58, | 0, | 6468355, |
| 634 | 59 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191408 | 59 | 0 | 59 | chr1 | 217961735 | 6468525 | 6468584 | 1 | 59, | 0, | 6468525, |
| 634 | 59 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191406 | 59 | 0 | 59 | chr1 | 217961735 | 6468657 | 6468716 | 1 | 59, | 0, | 6468657, |
| 634 | 59 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191400 | 59 | 0 | 59 | chr1 | 217961735 | 6468773 | 6468832 | 1 | 59, | 0, | 6468773, |
| 1080 | 65 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191407 | 65 | 0 | 65 | chr1 | 217961735 | 64963628 | 64963693 | 1 | 65, | 0, | 64963628, |
| 1097 | 907 | 6 | 0 | 0 | 1 | 2 | 0 | 0 | + | HE962242 | 915 | 0 | 915 | chr1 | 217961735 | 67116882 | 67117795 | 2 | 338,575, | 0,340, | 67116882,67117220, |
| 1125 | 74 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191405 | 74 | 0 | 74 | chr1 | 217961735 | 70898930 | 70899004 | 1 | 74, | 0, | 70898930, |
| 1125 | 75 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | MF191404 | 75 | 0 | 75 | chr1 | 217961735 | 70901383 | 70901458 | 1 | 75, | 0, | 70901383, |
| 1145 | 677 | 3 | 0 | 0 | 0 | 0 | 3 | 6147 | + | EF215086 | 680 | 0 | 680 | chr1 | 217961735 | 73519450 | 73526277 | 4 | 20,51,48,561, | 0,20,71,119, | 73519450,73522819,73524043,73525716, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server