Schema for estOrientInfo
  Database: calMil1    Primary Table: estOrientInfo    Row Count: 122,904   Data last updated: 2016-04-10
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AAVX02039917varchar(255) values Reference sequence chromosome or scaffold
chromStart 79940int(10) unsigned range Start position in chromosome
chromEnd 80451int(10) unsigned range End position in chromosome
name JK860342varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        calMil1.all_est.qName (via estOrientInfo.name)
      calMil1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AAVX020399177994080451JK86034200000
585AAVX020404875198554764JK95304320000
585AAVX020404875203454817JK96281620000
585AAVX020404875454055114JK87345200000
585AAVX020404875560856281JK923722000200
585AAVX020404875566156281JK910813000200
585AAVX020411972602626694JK948054017000
585AAVX020411972602626788JK949151016000
585AAVX020411972602726689JK948156016000
585AAVX020411972602726738JK947659016000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.