Schema for mrnaOrientInfo
  Database: calMil1    Primary Table: mrnaOrientInfo    Row Count: 40,109   Data last updated: 2017-04-01
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AAVX02039917varchar(255) values Reference sequence chromosome or scaffold
chromStart 80407int(10) unsigned range Start position in chromosome
chromEnd 80526int(10) unsigned range End position in chromosome
name JW864704varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        calMil1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AAVX020399178040780526JW86470400000
585AAVX020404872265955406JW862438200000
585AAVX020404875535056281JX063338000200
585AAVX02041197620616445JW86442740000
585AAVX0204119764036872JX057454000100
585AAVX020411972603829818JW873436200160
585AAVX020413041932220084JX06330400000
585AAVX020413044048541096JW87926600000
585AAVX020413044071841301JW87957201000
585AAVX020415213676339992JX053034400250

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.