Schema for xenoRefSeqAli
  Database: canFam3    Primary Table: xenoRefSeqAli    Row Count: 277,690   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 101smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3742int(10) unsigned range Number of bases that match that aren't repeats
misMatches 259int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 46int(10) unsigned range Number of 'N' bases
qNumInsert 14int(10) unsigned range Number of inserts in query
qBaseInsert 364int(10) unsigned range Number of bases inserted in query
tNumInsert 44int(10) unsigned range Number of inserts in target
tBaseInsert 231646int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001366205varchar(255) values Query sequence name
qSize 4850int(10) unsigned range Query sequence size
qStart 104int(10) unsigned range Alignment start position in query
qEnd 4515int(10) unsigned range Alignment end position in query
tName chr33varchar(255) values Target sequence name
tSize 31377067int(10) unsigned range Target sequence size
tStart 30016290int(10) unsigned range Alignment start position in target
tEnd 30251983int(10) unsigned range Alignment end position in target
blockCount 46int(10) unsigned range Number of blocks in alignment
blockSizes 23,132,167,165,54,51,125,17...longblob   Size of each block
qStarts 104,127,259,426,591,645,696...longblob   Start of each block in query.
tStarts 1125084,1126256,1140547,120...longblob   Start of each block in target.

Connected Tables and Joining Fields
        canFam3.all_est.qName (via xenoRefSeqAli.qName)
      canFam3.all_mrna.qName (via xenoRefSeqAli.qName)
      canFam3.refGene.name (via xenoRefSeqAli.qName)
      canFam3.refSeqAli.qName (via xenoRefSeqAli.qName)
      canFam3.xenoMrna.qName (via xenoRefSeqAli.qName)
      canFam3.xenoRefFlat.name (via xenoRefSeqAli.qName)
      canFam3.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
10137422590461436444231646+-NM_00136620548501044515chr333137706730016290302519834623,132,167,165,54,51,125,170,137,145,121,157,103,115,177,60,7,97,42,51,102,173,110,92,118,55,59,189,45,81,64,8,28,19,16,90,132,4 ...104,127,259,426,591,645,696,821,991,1128,1273,1394,1551,1654,1769,1946,2006,2013,2110,2152,2203,2305,2478,2588,2680,2800,2856,29 ...1125084,1126256,1140547,1209900,1250725,1259369,1261943,1263924,1265460,1270584,1282378,1287787,1302665,1318335,1323494,1326865, ...
73248229902282252767151+-NM_00120621231811453173chr112267878525200732196129111,73,117,126,61,98,80,120,108,66,73,109,131,133,70,88,170,50,52,100,130,81,133,161,172,26,21,25,118,145,256,329,446,572,633,731,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1911,1961,2013,2113,2243,2324,2457,2619,2872,2904,29 ...122356824,122389039,122390882,122391818,122392821,122394826,122396812,122397896,122399081,122400092,122400468,122402759,12240508 ...
8620272450017715276262++NM_1719973024343021chr58891525014542381145509153246,58,63,53,124,112,111,65,104,81,79,108,121,90,36,21,79,54,27,17,17,42,100,93,60,65,23,183,12,44,59,125,34,89,215,358,411,535,647,758,823,927,1008,1087,1195,1316,1419,1521,1728,1860,1935,1962,1981,2000,2068,2174,2267,2442,2558,2582, ...14542381,14542427,14542567,14546087,14546641,14546942,14547155,14547445,14547729,14547922,14548160,14548464,14548742,14549130,14 ...
73192443502262622367186+-NM_0535352721782721chr112267878525239132195824108,73,116,117,56,96,5,77,119,113,64,71,111,131,133,70,88,122,123,131,80,133,73,171,78,186,259,381,507,563,659,664,741,860,973,1037,1108,1219,1378,1511,1581,1669,1908,2043,2174,2254,2387,2550,122356827,122389039,122390882,122391823,122392826,122394826,122395029,122396815,122397896,122399080,122400094,122400468,12240275 ...
7322243230223812267002+-NM_00108274227811312781chr112267878525239132196223112,73,117,131,57,97,80,120,110,66,73,109,131,133,68,90,170,156,130,81,129,165,171,131,243,316,433,564,621,718,798,918,1028,1094,1167,1276,1435,1568,1636,1726,1947,2103,2233,2314,2445,2610,122356823,122389039,122390882,122391818,122392826,122394827,122396812,122397896,122399081,122400092,122400468,122402759,12240508 ...
7322662810224812267002+-NM_00116893327781282778chr112267878525239132196223112,73,117,131,56,98,80,120,110,66,73,109,132,133,70,88,170,157,130,81,138,154,171,128,240,313,430,561,617,715,795,915,1025,1091,1164,1273,1432,1565,1635,1723,1943,2100,2230,2311,2451,2607,122356823,122389039,122390882,122391818,122392826,122394826,122396812,122397896,122399081,122400092,122400468,122402759,12240508 ...
5875942790057711022548+-NM_00103016833833862030chr112267878526353828695911129,75,123,63,70,5,111,64,90,98,45,386,668,743,890,1037,1107,1112,1517,1581,1671,1985,122391826,122396817,122397896,122399108,122400466,122401003,122402759,122409654,122410445,122412157,122415202,
58736294360032493281269++NM_0117674612144572chr11226787853635603688944092,30,41,362,217,103,178,45,103,367,15,132,75,117,192,127,390,99,332,62,48,54,33,8,60,88,7,8,33,20,6,29,64,41,100,145,35,69,76,6 ...14,107,138,179,580,797,948,1137,1184,1294,1665,1682,1815,1890,2013,2214,2345,2736,2836,3193,3262,3363,3424,3471,3514,3588,3676,3 ...363560,363652,363682,363728,364090,364309,364478,364681,364727,365371,365739,365755,365887,365966,366083,366283,366410,366811,36 ...
5872052627001540515960++NM_00101117739011303214chr11226787853636003672391960,24,363,42,174,102,177,36,102,78,114,93,75,117,192,129,375,99,327,130,214,238,631,700,874,1024,1213,1261,1372,1600,1768,1864,1939,2062,2263,2407,2785,2887,363600,363682,363729,364092,364134,364310,364478,364681,364728,365373,365619,365792,365887,365966,366083,366283,366423,366811,36 ...
58719955890016467191055++NM_00109050747981523203chr11226787853636003672392160,24,177,180,39,174,102,177,36,102,54,81,93,75,123,183,129,219,132,97,327,152,236,260,437,650,695,869,1019,1208,1256,1367,1589,1757,1853,1928,2060,2252,2396,2639,2774,2876,363600,363682,363729,363912,364092,364134,364310,364478,364681,364728,365373,365619,365792,365887,365966,366092,366283,366423,36 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.