Schema for estOrientInfo
  Database: canFam5    Primary Table: estOrientInfo    Row Count: 377,824   Data last updated: 2020-08-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1445smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 112794016int(10) unsigned range Start position in chromosome
chromEnd 112802027int(10) unsigned range End position in chromosome
name AB042265varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam5.all_est.qName (via estOrientInfo.name)
      canFam5.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1445chr1112794016112802027AB04226530000
718chr191747238117480675AB04226410000
819chr363079664530798998AB04226650000
697chr11468690614687469AJ53689900400
697chr11468764014688156AJ536900001200
714chr11693273016933602AJ536893-1010031
745chr12107716921077652AJ53737700000
796chr12774636627746940AJ5369010230470
831chr13231642932316905AJ40230500000
855chr13541408935415371AJ536902-302000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.