Schema for intronEst
  Database: cavPor3    Primary Table: intronEst    Row Count: 10,423   Data last updated: 2016-06-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 831smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 319int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 5724int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AU083242varchar(255) values Query sequence name
qSize 335int(10) unsigned range Query sequence size
qStart 14int(10) unsigned range Alignment start position in query
qEnd 335int(10) unsigned range Alignment end position in query
tName scaffold_0varchar(255) values Target sequence name
tSize 88675666int(10) unsigned range Target sequence size
tStart 32348544int(10) unsigned range Alignment start position in target
tEnd 32354589int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 57,46,109,109,longblob   Size of each block
qStarts 0,57,103,212,longblob   Start of each block in query.
tStarts 32348544,32350363,32352437,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        cavPor3.all_est.qName (via intronEst.qName)
      cavPor3.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
8313192000035724-AU08324233514335scaffold_0886756663234854432354589457,46,109,109,0,57,103,212,32348544,32350363,32352437,32354480,
7032590000027278-AU0832912590259scaffold_10507590661558188415589421344,191,24,0,44,235,15581884,15582041,15589397,
5872960000026605+AU0832672960296scaffold_10944489312807282876293145,87,64,0,145,232,280728,283834,287565,
133100000013605-AU0833353100310scaffold_115079042134602799346067142261,49,0,261,34602799,34606665,
60116800000186-AU0831771680168scaffold_1114486175222680822270622154,14,0,154,2226808,2227048,
597311000004690-AU0831843110311scaffold_119392420716992681700269557,56,72,64,62,0,57,113,185,249,1699268,1699406,1699817,1700000,1700207,
8513530001124651-AU0833313540354scaffold_125074237634884923348899274251,11,60,31,0,252,263,323,34884923,34885174,34885186,34889896,
867221000001478-AU08329024827248scaffold_13483636103705033637051035245,176,0,45,37050336,37050859,
5934040000015865+AU0831634040404scaffold_1432535745110169511079642300,104,0,300,1101695,1107860,
599308000003170-AU0832513080308scaffold_148245550718925051892983451,17,152,88,0,51,68,220,1892505,1892557,1892662,1892895,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.