Schema for xenoMrna
  Database: cb3    Primary Table: xenoMrna    Row Count: 1,679,098   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 44int(10) unsigned Number of bases that match that aren't repeats
misMatches 6int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 279int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JU392567varchar(255) Query sequence name
qSize 319int(10) unsigned Query sequence size
qStart 119int(10) unsigned Alignment start position in query
qEnd 169int(10) unsigned Alignment end position in query
tName chrIvarchar(255) Target sequence name
tSize 11274843int(10) unsigned Target sequence size
tStart 452int(10) unsigned Alignment start position in target
tEnd 781int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 33,17,longblob Size of each block
qStarts 119,152,longblob Start of each block in query.
tStarts 452,764,longblob Start of each block in target.

Connected Tables and Joining Fields
        cb3.all_est.qName (via xenoMrna.qName)
      cb3.all_mrna.qName (via xenoMrna.qName)
      cb3.xenoRefFlat.name (via xenoMrna.qName)
      cb3.xenoRefGene.name (via xenoMrna.qName)
      cb3.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58544600001279++JU392567319119169chrI11274843452781233,17,119,152,452,764,
627195510000111+-JR391533993635881chrIV15290274551562955158862180,66,635,815,9774388,9774579,
6405622000000+-BX070346231129207chrIII1354456272328067232884178,129,6311678,
734852680056935336887++FX18324934686222068chrI11274843757338397630,201,48,60,51,363,622,988,1198,1285,1381,1705,757,336858,337065,337152,337305,338034,
7346600001363601+-JP14686826572124chrI11274843821364474226,26,72,98,10910369,11273996,
720680461005390654065++KY64020870236365683chrX2060803217771755177769616186,42,417,222,126,148,636,945,1035,1569,5373,5535,17771755,17772292,17772382,17772877,17776651,17776813,
64411448000000+-KY8097291074495657chrV16004101777718277773441162,495,8226757,
586120660000145++KY8097351173567753chrV160041012207602209912129,57,567,696,220760,220934,
614187137002362266++KY809738131781441chrUn731169038179893818579396,126,102,81,180,339,3817989,3818318,3818477,
6991248000002295++KY80974592112216chrIV152902741494937314949872333,67,104,12,45,112,14949373,14949453,14949768,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.