Schema for ensGene
  Database: ce11    Primary Table: ensGene    Row Count: 61,451   Data last updated: 2021-05-25
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name Y74C9A.6varchar(255) values Ensembl transcript ID
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 3746int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3909int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 3909int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 3909int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 3746,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3909,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 WBGene00023193varchar(255) values Ensembl gene ID
cdsStartStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames -1,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        ce11.ensGtp.transcript (via ensGene.name)
      ce11.ensPep.name (via ensGene.name)
      ce11.ensemblSource.name (via ensGene.name)
      ce11.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
585Y74C9A.6chrI-374639093909390913746,3909,0WBGene00023193nonenone-1,
585Y74C9A.3.1chrI-41151023042201014854115,5194,6036,9726,10094,4358,5296,6327,9846,10230,0WBGene00022277cmplcmpl0,0,0,0,0,
585Y74C9A.2a.1chrI+11494168371164016585411494,11617,14950,16472,11561,11689,15160,16837,0WBGene00022276cmplcmpl-1,0,1,1,
585Y74C9A.2a.3chrI+11494167931164016585511494,11617,14950,16472,16701,11561,11689,15160,16585,16793,0WBGene00022276cmplcmpl-1,0,1,1,-1,
585Y74C9A.2a.4chrI+11498168371164016585411498,11617,14950,16472,11557,11689,15160,16837,0WBGene00022276cmplcmpl-1,0,1,1,
585Y74C9A.2a.5chrI+11504168371164016585411504,11622,14950,16472,11561,11689,15160,16837,0WBGene00022276cmplcmpl-1,0,1,1,
585Y74C9A.2a.2chrI+11617168371164016585311617,14950,16472,11689,15160,16837,0WBGene00022276cmplcmpl0,1,1,
585Y74C9A.2b.1chrI+11622168371510216585311622,14949,16472,11686,15160,16837,0WBGene00022276cmplcmpl-1,0,1,
585Y74C9A.4b.1chrI-174862678117910267781217486,18005,19014,20270,20847,21012,24650,24928,25272,26370,26589,26732,17958,18115,19241,20478,20964,21139,24845,25090,25472,26524,26690,26781,0WBGene00022278cmplcmpl0,1,2,1,1,0,0,0,1,0,1,0,
585Y74C9A.4a.1chrI-174962678117910267781217496,18005,19014,20270,20847,21012,24650,24928,25272,26370,26589,26732,17958,18115,19241,20478,20964,21139,24845,25090,25472,26524,26681,26781,0WBGene00022278cmplcmpl0,1,2,1,1,0,0,0,1,0,1,0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.