Schema for mmBlastTab
  Database: ce4    Primary Table: mmBlastTab    Row Count: 4,922   Data last updated: 2007-10-11
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query C42D4.8varchar(255) values Name of sequence in this assembly (query)
target uc007sqy.1varchar(255) values Name of sequence in other assembly (target)
identity 56.87float range Percent identity
aliLength 1405int(10) unsigned range Length of alignment
mismatch 570int(10) unsigned range Number of mismatches
gapOpen 14int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 1394int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 1380int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1463double range Bit score

Connected Tables and Joining Fields
        ce4.kimExpDistance.query (via mmBlastTab.query)
      ce4.kimExpDistance.target (via mmBlastTab.query)
      ce4.orfToGene.name (via mmBlastTab.query)
      ce4.sangerBlastTab.query (via mmBlastTab.query)
      ce4.sangerBlastTab.target (via mmBlastTab.query)
      ce4.sangerCanonical.transcript (via mmBlastTab.query)
      ce4.sangerGene.name (via mmBlastTab.query)
      ce4.sangerGeneToWBGeneID.sangerGene (via mmBlastTab.query)
      ce4.sangerIsoforms.transcript (via mmBlastTab.query)
      ce4.sangerLinks.orfName (via mmBlastTab.query)
      ce4.sangerPep.name (via mmBlastTab.query)
      ce4.sangerToRefSeq.name (via mmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
C42D4.8uc007sqy.156.87140557014013940138001463
T21H3.3uc009fin.197.9914930014901492e-79291
F38A6.2uc007ozs.128.81663428152398881788115e-80296
F28C1.3auc009fmh.139.3747526093850224607.999999999999999e-84309
F23H12.2uc009nza.138.9713676123159161454.0000000000000004e-23104
C02H7.3buc008kva.143.1564226912456426303e-137487
F38A1.8uc009osy.137.554582669044604504e-68256
T26C5.3cuc008pkd.149.3646621261025661015451e-111400
C46H3.2buc007mip.140.741357911983334896231.0000000000000001e-24112
Y71H2B.10auc007kot.162.8196034070954094901109

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.