Schema for xenoRefFlat
  Database: ce6    Primary Table: xenoRefFlat    Row Count: 33,489   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName UBE2Kvarchar(255) values Name of gene as it appears in genome browser.
name NM_001078671varchar(255) values Name of gene
chrom chrIIIvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 189174int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 189440int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 189174int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 189440int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 189174,189313,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 189257,189440,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ce6.xenoMrna.qName (via xenoRefFlat.name)
      ce6.xenoRefGene.name (via xenoRefFlat.name)
      ce6.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
UBE2KNM_001078671chrIII+1891741894401891741894402189174,189313,189257,189440,
HYP2NM_001178849chrII-856002185608568560021856085628560021,8560757,8560171,8560856,
ECM10NM_001178845chrV-482508148266454825081482664554825081,4825666,4825852,4826038,4826399,4825618,4825822,4825972,4826323,4826645,
aldh1l1NM_001198772chrIV+11022574110257051102257411025705911022574,11022939,11023110,11023351,11023486,11024103,11024805,11025151,11025462,11022700,11023064,11023288,11023423,11023573,11024723,11025115,11025313,11025705,
LOC107855164NM_001324714chrI-616487161664676164871616646796164871,6165158,6165299,6165343,6165493,6165669,6165858,6165963,6166353,6164967,6165176,6165314,6165421,6165601,6165678,6165870,6166071,6166467,
mink1NM_001089579chrX-10427413104280831042741310428083410427413,10427563,10427768,10427915,10427545,10427617,10427771,10428083,
F8D11.8; F8D11_8NM_103449chrV-12232312122325581223231212232558212232312,12232522,12232417,12232558,
SHM7NM_103323chrIII-644060364416326440603644163246440603,6440750,6440885,6441293,6440660,6440855,6441227,6441632,
MAT3NM_129243chrIV+584868758502815848687585028135848687,5849618,5849960,5848750,5849861,5850281,
RHOJNM_001168417chrII+761640276169767616402761697637616402,7616563,7616913,7616510,7616725,7616976,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.