Schema for ensGene
  Database: choHof1    Primary Table: ensGene    Row Count: 43,012   Data last updated: 2019-01-11
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSCHOT00000008562.1varchar(255) values Ensembl transcript ID
chrom scaffold_0varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 39845int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 190023int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 39845int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 190023int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 39845,85668,124612,124759,1...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 40087,85803,124629,124936,1...longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 ENSCHOG00000008544.1varchar(255) values Ensembl gene ID
cdsStartStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 1,1,2,2,0,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        choHof1.ensGtp.transcript (via ensGene.name)
      choHof1.ensPep.name (via ensGene.name)
      choHof1.ensemblSource.name (via ensGene.name)
      choHof1.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
73ENSCHOT00000008562.1scaffold_0-3984519002339845190023539845,85668,124612,124759,189382,40087,85803,124629,124936,190023,0ENSCHOG00000008544.1cmplcmpl1,1,2,2,0,
586ENSCHOT00000014619.1scaffold_0+1326791328151328151328151132679,132815,0ENSCHOG00000014090.1nonenone-1,
585ENSCHOT00000007398.1scaffold_10-58167584815816758481158167,58481,0ENSCHOG00000007383.1incmplincmpl1,
585ENSCHOT00000003790.1scaffold_100+14979654341497965434714979,41606,44852,49610,62689,63585,65293,15085,41812,44999,49812,62903,63699,65434,0ENSCHOG00000003774.1cmplcmpl1,2,1,1,2,0,0,
585ENSCHOT00000010783.1scaffold_1000+826184418261844118261,8441,0ENSCHOG00000010739.1cmplcmpl0,
585ENSCHOT00000013197.1scaffold_100018-99571005899571005819957,10058,0ENSCHOG00000013138.1cmplincmpl1,
585ENSCHOT00000005957.1scaffold_100043-427151442715142427,616,527,1514,0ENSCHOG00000005943.1cmplcmpl1,0,
585ENSCHOT00000007646.1scaffold_100044+459529145952916459,949,3074,3343,3401,5069,526,1020,3258,3400,3413,5291,0ENSCHOG00000007615.1incmplcmpl2,0,2,0,0,0,
585ENSCHOT00000004760.1scaffold_10005+11016994110169945110,157,10495,11282,16902,156,171,10562,11353,16994,0ENSCHOG00000004738.1cmplincmpl0,1,0,1,0,
585ENSCHOT00000015889.1scaffold_10005-405041604160416014050,4160,0ENSCHOG00000015847.1nonenone-1,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.