Schema for xenoMrna
  Database: choHof1    Primary Table: xenoMrna    Row Count: 10,397,425   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 115int(10) unsigned Number of bases that match that aren't repeats
misMatches 22int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 2int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName EZ495200varchar(255) Query sequence name
qSize 226int(10) unsigned Query sequence size
qStart 87int(10) unsigned Alignment start position in query
qEnd 224int(10) unsigned Alignment end position in query
tName scaffold_0varchar(255) Target sequence name
tSize 197267int(10) unsigned Target sequence size
tStart 15256int(10) unsigned Alignment start position in target
tEnd 15395int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 21,26,90,longblob Size of each block
qStarts 87,108,134,longblob Start of each block in query.
tStarts 15256,15278,15305,longblob Start of each block in target.

Connected Tables and Joining Fields
        choHof1.all_mrna.qName (via xenoMrna.qName)
      choHof1.xenoRefFlat.name (via xenoMrna.qName)
      choHof1.xenoRefGene.name (via xenoMrna.qName)
      choHof1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58511522000022++EZ49520022687224scaffold_01972671525615395321,26,90,87,108,134,15256,15278,15305,
585721100135234215++JO98156336958176scaffold_01972672705361351330,29,24,58,123,152,27053,58815,61327,
73741000003109558++JL7958982776202286scaffold_019726727053136695427,25,7,25,202,229,254,261,27053,58821,68250,136670,
73681600002109582+-JL642965179516421726scaffold_019726727058136724351,7,26,1642,1693,1700,60543,84178,170183,
5856571180087688707+-AK025924178271550scaffold_0197267361073758910349,112,4,60,26,48,78,33,26,39,7,357,482,486,675,740,806,1388,1449,1511,159678,160027,160153,160158,160343,160388,160456,161001,161062,161121,
732815351002454222149591+-AK173075483311254833scaffold_01972673726719002434642,173,26,3,174,75,39,54,130,56,74,33,46,36,145,58,30,40,155,76,30,22,15,64,123,155,24,29,36,15,175,93,76,244,1125,1767,1940,1966,1969,2211,2296,2427,2482,2613,2678,2755,2788,2834,2878,3035,3097,3127,3169,3326,3404,3451,3479,3495,3560,368 ...7243,72331,84322,84378,157182,157431,157524,157649,157703,157833,157889,157963,157997,158045,158088,158238,158296,158328,158368, ...
5851487165002181215815+-JU53180227221582622scaffold_019726737270397372233,8,29,8,72,131,18,48,24,208,12,215,51,42,287,115,66,11,27,117,69,61,158,259,278,316,326,438,572,592,663,688,900,913,1138,1190,1371,1931,2056,2159,2321,2364,2489,2561,157530,157658,157678,157713,157721,157833,157964,157988,158064,158088,158296,158308,158534,158585,158743,159298,159424,159493,15 ...
732877351002554222149525+-AK03446546448744644scaffold_01972673727119002434642,173,27,64,176,75,39,54,130,56,74,33,46,36,145,58,30,40,155,76,30,22,15,64,123,155,24,29,36,15,175,93,78,240,874,1516,1689,1718,1782,2026,2111,2242,2297,2428,2493,2570,2603,2649,2693,2850,2912,2942,2984,3141,3219,3266,3294,3310,3375,3498 ...7243,72331,84322,95036,157180,157431,157524,157649,157703,157833,157889,157963,157997,158045,158088,158238,158296,158328,158368, ...
732278268001840616149172+-AB038667409011174069scaffold_01972673830619002426642,173,26,141,172,75,39,54,130,56,74,33,46,36,145,58,30,40,155,76,30,22,15,64,123,91,1117,1759,1932,2125,2266,2506,2591,2722,2777,2908,2973,3050,3083,3129,3173,3330,3392,3422,3464,3621,3699,3746,3774,3790,3855,397 ...7243,72331,84322,111462,157184,157431,157524,157649,157703,157833,157889,157963,157997,158045,158088,158238,158296,158328,158368 ...
5856044900319310+-AK39222070015687scaffold_019726738310389735230,107,23,15,278,15,245,364,393,409,158294,158525,158636,158664,158679,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.