Schema for mrnaOrientInfo
  Database: ci3    Primary Table: mrnaOrientInfo    Row Count: 10,249   Data last updated: 2017-04-10
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 35169int(10) unsigned range Start position in chromosome
chromEnd 35426int(10) unsigned range End position in chromosome
name AK175023varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 18smallint(6) range Number of trailing A's
revSizePolyA 2smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ci3.all_mrna.qName (via mrnaOrientInfo.name)
      ci3.refFlat.name (via mrnaOrientInfo.name)
      ci3.refGene.name (via mrnaOrientInfo.name)
      ci3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr13516935426AK175023018200
585chr16237565985AK11425143000
585chr16813974017AK1163607160400
585chr16845074017AK115732716100
585chr16929469485AK174926016000
585chr18796889774AK112504018000
585chr1110300115029AK1131663170370
73chr1122656680497AK114005280240
73chr1126607137333AK115189416000
586chr1139209141285AK173377316000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.