Schema for mrnaOrientInfo
  Database: criGriChoV2    Primary Table: mrnaOrientInfo    Row Count: 72,293   Data last updated: 2019-05-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom LT883664v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 593161int(10) unsigned range Start position in chromosome
chromEnd 601970int(10) unsigned range End position in chromosome
name JI872642varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 19smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        criGriChoV2.all_mrna.qName (via mrnaOrientInfo.name)
      criGriChoV2.refFlat.name (via mrnaOrientInfo.name)
      criGriChoV2.refGene.name (via mrnaOrientInfo.name)
      criGriChoV2.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
589LT883664v1593161601970JI872642300190
589LT883664v1593164601970JP058409300180
589LT883664v1594874595414JI89077601000
589LT883664v1594874595414JP06491401000
589LT883664v1595987596588JI88174100000
589LT883664v1595987596588JP05351600000
590LT883664v1727583727613KC65412500000
73LT883664v1907716937887JI862564500180
73LT883664v1907716937887JP039784500180
591LT883664v1910216910734JI867406000012

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.