Schema for xenoRefFlat
  Database: criGriChoV2    Primary Table: xenoRefFlat    Row Count: 320,337   Data last updated: 2019-05-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC683469varchar(255) values Name of gene as it appears in genome browser.
name NM_001115040varchar(255) values Name of gene
chrom LT883664v1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 26490int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 80737int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 26490int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 80737int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 26490,80672,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 26673,80737,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        criGriChoV2.xenoRefGene.name (via xenoRefFlat.name)
      criGriChoV2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC683469NM_001115040LT883664v1+26490807372649080737226490,80672,26673,80737,
CryzNM_001172936LT883701v1-476805347842304768053478422084768053,4768510,4768700,4771689,4776408,4778153,4782115,4784109,4768197,4768605,4768802,4771839,4776460,4778317,4782268,4784230,
PROS1NM_174438LT883672v1+423278974238942342327900423894231742327897,42345780,42349177,42358574,42359780,42360044,42362880,42363351,42367297,42369714,42373053,42376752,42378352,42379233,42 ...42327976,42345938,42349200,42358663,42359896,42360138,42363000,42363355,42367421,42369830,42373243,42376920,42378521,42379235,42 ...
PROCRNM_174437LT883667v1-31237318653123731865331237,31575,31832,31347,31801,31865,
PRKG1NM_174436LT883673v1-644305516559408764431246655940832364430551,64430641,64430706,64430769,64430828,64433902,64442122,64442270,64443624,64444907,64451903,64453444,64470638,64535849,64 ...64430623,64430695,64430751,64430784,64431345,64433969,64442185,64442393,64443743,64445054,64451989,64453586,64470735,64535889,64 ...
PRKCANM_174435LT883676v1-416190174199276141619018419926821841619017,41631133,41633288,41640334,41652197,41653190,41655712,41658434,41660758,41686119,41686421,41687663,41722484,41725947,41 ...41619183,41631275,41633395,41640415,41652338,41653249,41655806,41658608,41660896,41686216,41686556,41687820,41722611,41726057,41 ...
GPM6ANM_001283496LT883664v1-12156422583312350722581910121564,121795,123282,127282,127304,127980,132187,137716,146452,225782,121778,121929,123657,127285,127370,128057,132341,137873,146645,225833,
Atp6v0a1NM_031604LT883676v1+348103763486743334812522348660553234810376,34812442,34812468,34812516,34820200,34822724,34823541,34830143,34830745,34832783,34833983,34835583,34837850,34840539,34 ...34810470,34812458,34812493,34812639,34820279,34822822,34823670,34830226,34830872,34832866,34834073,34835800,34838001,34840679,34 ...
HADHNM_001261209LT883679v1+11055514110797851105551411079523811055514,11059629,11062293,11066483,11067740,11078024,11079404,11079752,11055643,11059787,11062424,11066569,11067815,11078139,11079526,11079785,
gpm6aNM_001079383LT883664v1-12156822582812350722581913121568,121774,122184,122256,123062,123123,123507,127304,127980,132185,137716,146452,225780,121757,121817,122205,122269,123098,123138,123660,127370,128055,132341,137873,146643,225828,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.