Schema for xenoMrna
  Database: danRer11    Primary Table: xenoMrna    Row Count: 3,727,037   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 198int(10) unsigned Number of bases that match that aren't repeats
misMatches 46int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 5int(10) unsigned Number of inserts in query
qBaseInsert 223int(10) unsigned Number of bases inserted in query
tNumInsert 8int(10) unsigned Number of inserts in target
tBaseInsert 697650int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JT484958varchar(255) Query sequence name
qSize 936int(10) unsigned Query sequence size
qStart 220int(10) unsigned Alignment start position in query
qEnd 687int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 59578282int(10) unsigned Target sequence size
tStart 6251int(10) unsigned Alignment start position in target
tEnd 704145int(10) unsigned Alignment end position in target
blockCount 9int(10) unsigned Number of blocks in alignment
blockSizes 33,23,25,29,29,15,44,18,28,longblob Size of each block
qStarts 220,262,285,336,365,395,459...longblob Start of each block in query.
tStarts 58874137,58875541,58965060,...longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer11.all_est.qName (via xenoMrna.qName)
      danRer11.all_mrna.qName (via xenoMrna.qName)
      danRer11.refGene.name (via xenoMrna.qName)
      danRer11.refSeqAli.qName (via xenoMrna.qName)
      danRer11.xenoRefFlat.name (via xenoMrna.qName)
      danRer11.xenoRefGene.name (via xenoMrna.qName)
      danRer11.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73198460052238697650+-JT484958936220687chr1595782826251704145933,23,25,29,29,15,44,18,28,220,262,285,336,365,395,459,503,659,58874137,58875541,58965060,58966934,59155009,59155635,59225507,59225594,59572003,
5852651310027534555+-JT03124057482553chr159578282667011621472,105,138,81,82,154,265,472,59566661,59568091,59568588,59571531,
5851153200110812850+-EZ547391391107362chr159578282667396702114,33,107,329,59568612,59571576,
5851508100212023242+-AY307168553153504chr159578282667310146366,93,72,153,264,432,59568136,59568633,59571537,
58517410500110523194+-AY814371542129513chr159578282667310146366,141,72,129,195,441,59568136,59568588,59571537,
5851711050017523197+-EZ000043688308659chr159578282667310146366,138,72,308,374,587,59568136,59568588,59571537,
5851711050017523197+-FN316057536156507chr159578282667310146366,138,72,156,222,435,59568136,59568588,59571537,
5851711050017523197+-FN316059558153504chr159578282667310146366,138,72,153,219,432,59568136,59568588,59571537,
5851711050017523197+-FN322248533153504chr159578282667310146366,138,72,153,219,432,59568136,59568588,59571537,
5851711050017523197+-FN322249533153504chr159578282667310146366,138,72,153,219,432,59568136,59568588,59571537,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.