Schema for mgcFullMrna
  Database: danRer3    Primary Table: mgcFullMrna    Row Count: 23,069   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1119int(10) unsigned range Number of bases that match that aren't repeats
misMatches 4int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 198373int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC151902varchar(255) values Query sequence name
qSize 2061int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1123int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 55805710int(10) unsigned range Target sequence size
tStart 9163int(10) unsigned range Alignment start position in target
tEnd 208659int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 166,392,159,406,longblob   Size of each block
qStarts 938,1104,1496,1655,longblob   Start of each block in query.
tStarts 9163,37776,132256,208253,longblob   Start of each block in target.

Connected Tables and Joining Fields
        danRer3.all_mrna.qName (via mgcFullMrna.qName)
      danRer3.mgcGenes.name (via mgcFullMrna.qName)
      danRer3.mrnaOrientInfo.name (via mgcFullMrna.qName)
      hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
731119400003198373-BC151902206101123chr15580571091632086594166,392,159,406,938,1104,1496,1655,9163,37776,132256,208253,
7335326000017136523+BC162118353803538chr15580571039342053348118113,458,178,182,231,156,170,156,145,350,145,84,162,260,94,33,60,561,0,113,571,749,931,1162,1318,1488,1644,1789,2139,2284,2368,2530,2790,2884,2917,2977,393420,393540,411210,430448,457532,460049,463278,466999,476158,477503,488949,499048,501239,509467,510096,514086,528527,532920,
588567200123625+BC13421913300571chr155805710440052441246510,94,21,169,275,0,12,106,127,296,440052,440062,440556,440679,440971,
588562200003625+BC15252713323567chr155805710440057441246499,21,169,275,3,102,123,292,440057,440556,440679,440971,
7319362200111415881-BC163887195901959chr15580571063874165658016124,137,156,183,93,126,90,86,108,126,157,152,89,144,127,60,0,125,262,418,601,694,820,910,996,1104,1230,1387,1539,1628,1772,1899,638741,638865,640256,641500,641763,643283,643853,644814,645019,646898,647093,649965,651946,652417,655230,656520,
5901077106500025095+BC163315115201152chr1558057106873396935863517,161,474,0,517,678,687339,690698,693112,
590150318003122610135-BC093283166801643chr1558057107102597219159565,155,122,97,134,121,98,133,96,25,591,746,868,1085,1219,1341,1439,1572,710259,710824,713103,713488,715693,717544,717665,718904,721819,
590793500212157353-BC16408198834953chr1558057107108397189907140,122,97,134,121,98,86,35,175,297,514,648,770,868,710839,713103,713488,715693,717544,717665,718904,
5901102200130533078-BC05942816381991608chr1558057107247257289074121,610,149,224,30,456,1066,1215,724725,724856,727197,728683,
5901102100130533078-BC06282615811461554chr1558057107247267289074120,610,149,224,27,452,1062,1211,724726,724856,727197,728683,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.