Schema for all_est
  Database: danRer4    Primary Table: all_est    Row Count: 2,094,653   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 589smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 260int(10) unsigned Number of bases that match that aren't repeats
misMatches 2int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 945int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA566413varchar(255) Query sequence name
qSize 310int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 262int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 70589895int(10) unsigned Target sequence size
tStart 538295int(10) unsigned Alignment start position in target
tEnd 539502int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 113,33,50,8,58,longblob Size of each block
qStarts 0,113,146,196,204,longblob Start of each block in query.
tStarts 538295,538409,539384,539435...longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer4.all_mrna.qName (via all_est.qName)
      danRer4.est.qName (via all_est.qName)
      danRer4.estOrientInfo.name (via all_est.qName)
      danRer4.intronEst.qName (via all_est.qName)
      danRer4.refGene.name (via all_est.qName)
      danRer4.refSeqAli.qName (via all_est.qName)
      danRer4.xenoMrna.qName (via all_est.qName)
      danRer4.xenoRefGene.name (via all_est.qName)
      danRer4.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
589260200004945+AA5664133100262chr1705898955382955395025113,33,50,8,58,0,113,146,196,204,538295,538409,539384,539435,539444,
5893843000022105-AA6587273870387chr1705898956172516197433169,125,93,0,169,294,617251,619123,619650,
5933623000032052+AA60592244419384chr170589895105938410618014161,48,129,27,19,180,228,357,1059384,1060672,1061644,1061774,
5931532000011-AA5667721930155chr17058989511288441129000219,136,38,57,1128844,1128864,
5934649002291552+AA49461948510485chr170589895113997011419951255,95,4,4,18,8,146,57,17,18,11,40,10,65,160,164,168,187,195,342,399,416,434,445,1139970,1140026,1140123,1140420,1141539,1141557,1141566,1141712,1141770,1141788,1141943,1141955,
594116000001321+AA4954351240116chr17058989513016851302122224,92,0,24,1301685,1302030,
5952955001124988-AA49512835231332chr170589895131638513216733121,160,19,20,141,302,1316385,1321492,1321654,
5964847000015667+AA6587184910491chr170589895145142214575802418,73,0,418,1451422,1457507,
59610220000696+AA49491313026130chr17058989515307441530944750,5,9,5,11,7,17,26,76,81,90,95,106,113,1530744,1530795,1530801,1530811,1530817,1530919,1530927,
5995000001155385+AA6061265010501chr17058989518418201847705762,55,64,137,111,25,46,0,63,118,182,319,430,455,1841820,1841882,1842068,1845641,1846164,1847633,1847659,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.