Schema for mgcFullMrna
  Database: danRer6    Primary Table: mgcFullMrna    Row Count: 19,444   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 673int(10) unsigned range Number of bases that match that aren't repeats
misMatches 27int(10) unsigned range Number of bases that don't match
repMatches 86int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 10int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 6int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC151925varchar(255) values Query sequence name
qSize 1691int(10) unsigned range Query sequence size
qStart 881int(10) unsigned range Alignment start position in query
qEnd 1677int(10) unsigned range Alignment end position in query
tName Zv8_NA1010varchar(255) values Target sequence name
tSize 14675int(10) unsigned range Target sequence size
tStart 13073int(10) unsigned range Alignment start position in target
tEnd 13865int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 103,57,626,longblob   Size of each block
qStarts 14,125,184,longblob   Start of each block in query.
tStarts 13073,13182,13239,longblob   Start of each block in target.

Connected Tables and Joining Fields
        danRer6.all_mrna.qName (via mgcFullMrna.qName)
      danRer6.mgcGenes.name (via mgcFullMrna.qName)
      danRer6.mrnaOrientInfo.name (via mgcFullMrna.qName)
      hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856732786021016-BC15192516918811677Zv8_NA10101467513073138653103,57,626,14,125,184,13073,13182,13239,
58587672101442270-BC124507211111782086Zv8_NA10134578535257255746637,264,160,118,138,187,25,66,330,490,608,746,52572,52609,54131,54797,55244,55559,
5858037000042270-BC165631199911541964Zv8_NA101345785352666557465207,160,118,138,187,35,242,402,520,658,52666,54131,54797,55244,55559,
73150740000543652+BC09852948181661677Zv8_NA101613922291706136869670,664,156,336,125,160,166,236,900,1056,1392,1517,91706,93703,125882,131598,135526,136709,
5855542000032271-BC095824234510101566Zv8_NA10191325234531724212,12,170,162,779,991,1003,1173,345,2650,2763,3010,
5855542000032271-BC165648217310071563Zv8_NA10191325234531724212,12,170,162,610,822,834,1004,345,2650,2763,3010,
585712417000041939-BC054571347919772863Zv8_NA102063549631964347895117,347,33,73,316,616,733,1080,1113,1186,31964,32204,34014,34148,34473,
58523261400001539265-BC13954431795752915Zv8_NA103107831446714627616109,114,78,24,50,193,60,168,165,597,258,101,136,120,73,94,264,373,487,565,589,639,832,892,1060,1225,1822,2080,2181,2317,2437,2510,4671,10633,10818,14852,15476,17749,21364,23402,27200,28941,36019,38037,38220,45368,46023,46182,
5855742001143081+BC13954431790577Zv8_NA10310783145761061267660,181,87,70,56,122,0,60,241,328,399,455,57610,58004,58274,58451,58521,61145,
5857934000064983-BC165454103634831Zv8_NA1032780983476127777,114,114,158,162,104,68,205,282,396,510,668,830,934,347,3197,3401,3598,4247,5824,6059,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.