Schema for intronEst
  Database: danRer7    Primary Table: intronEst    Row Count: 1,006,575   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 214int(10) unsigned Number of bases that match that aren't repeats
misMatches 2int(10) unsigned Number of bases that don't match
repMatches 253int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 2int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 968int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA542461varchar(255) Query sequence name
qSize 483int(10) unsigned Query sequence size
qStart 12int(10) unsigned Alignment start position in query
qEnd 483int(10) unsigned Alignment end position in query
tName Zv9_NA107varchar(255) Target sequence name
tSize 55784int(10) unsigned Target sequence size
tStart 18246int(10) unsigned Alignment start position in target
tEnd 19683int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 7,207,59,62,67,67,longblob Size of each block
qStarts 12,19,226,286,348,416,longblob Start of each block in query.
tStarts 18246,18254,19326,19389,195...longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer7.all_est.qName (via intronEst.qName)
      danRer7.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58521422530224968+AA54246148312483Zv9_NA10755784182461968367,207,59,62,67,67,12,19,226,286,348,416,18246,18254,19326,19389,19549,19616,
58541608200052817-AA5425055160498Zv9_NA107557842095124266631,99,189,117,9,53,18,49,148,337,454,463,20951,20985,23747,24015,24133,24213,
5854970002255919-AA5426534990499Zv9_NA163346151796824384821,135,102,53,70,61,11,44,0,21,156,258,311,381,443,455,17968,17990,19185,21060,24108,24268,24329,24340,
5852332000035794-AA4946912350235Zv9_NA232400562857934608410,7,76,142,0,10,17,93,28579,28590,28598,34466,
585183100002796-AA5666232640184Zv9_NA631243201315214132314,128,42,80,94,222,13152,13167,14090,
5852038002322643-AA5668282140214Zv9_NA66076246167591961358,34,9,33,127,0,10,45,54,87,16759,16767,16801,16811,19486,
58526013700032045-AA5666242980298Zv9_NA883677383556237905438,79,63,118,0,38,117,180,35562,35679,35835,37787,
585216100114427-AA56634825621239Zv9_NA88762336416874233156,21,5,22,163,17,23,44,50,72,41687,41694,41717,41861,42168,
5855134001254604+AA4971595190519Zv9_NA900235811486719988681,120,90,66,85,75,0,81,201,291,359,444,14867,14949,17615,18018,18085,19913,
585168268000210757+AA49522731173311Zv9_NA96333607010995336,92,110,73,109,201,0,39,10885,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.