Schema for refFlat
  Database: dm1    Primary Table: refFlat    Row Count: 34,386   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CG9467varchar(255) values Name of gene as it appears in genome browser.
name NM_001382202varchar(255) values Name of gene
chrom chr3Rvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 5623506int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 5626764int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 5624176int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 5626468int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 5623506,5626406,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 5626328,5626764,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.refLink.name (via refFlat.geneName)
      dm1.bdgpToRefSeq.value (via refFlat.name)
      dm1.mrnaOrientInfo.name (via refFlat.name)
      dm1.refGene.name (via refFlat.name)
      dm1.refSeqAli.qName (via refFlat.name)
      hgFixed.gbCdnaInfo.acc (via refFlat.name)
      hgFixed.gbSeq.acc (via refFlat.name)
      hgFixed.imageClone.acc (via refFlat.name)
      hgFixed.refLink.mrnaAcc (via refFlat.name)
      hgFixed.refSeqStatus.mrnaAcc (via refFlat.name)
      hgFixed.refSeqSummary.mrnaAcc (via refFlat.name)
      knownGeneV39.kgXref.refseq (via refFlat.name)
      knownGeneV39.knownToRefSeq.value (via refFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CG9467NM_001382202chr3R-562350656267645624176562646825623506,5626406,5626328,5626764,
CG9467NM_001382203chr3R-562350656267645624026562646825623506,5626406,5626328,5626764,
CG46467NM_001382173chr3R+570041858146165700878570108875700418,5756101,5769218,5769414,5808018,5812387,5812636,5701961,5756283,5769325,5769632,5808110,5812573,5814616,
Nuak1NM_001382099chr3R+6090045612863861169866128039136090045,6116839,6117312,6117576,6117855,6118933,6122473,6123179,6123508,6123985,6124188,6125373,6127683,6090618,6117192,6117512,6117794,6118453,6120058,6122849,6123437,6123637,6124115,6124331,6125492,6128638,
Nuak1NM_001382103chr3R+6090045612863861169866128039156090045,6116839,6117312,6117576,6117855,6118933,6121060,6122473,6123179,6123508,6123985,6124188,6124741,6125373,6127683,6090618,6117192,6117512,6117794,6118453,6120058,6121801,6122849,6123437,6123637,6124115,6124331,6124798,6125492,6128638,
Nuak1NM_001382098chr3R+6090045613420761169866133460146090045,6116839,6117312,6117576,6117855,6118933,6122473,6123179,6123508,6123985,6124188,6125373,6129049,6133162,6090618,6117192,6117512,6117794,6118453,6120058,6122849,6123437,6123637,6124115,6124331,6125492,6133106,6134207,
Nuak1NM_001382101chr3R+6090045613420761169866133217166090045,6116839,6117312,6117576,6117855,6118933,6121060,6122473,6123179,6123508,6123985,6124188,6124741,6125373,6129049,6133162,6090618,6117192,6117512,6117794,6118453,6120058,6121801,6122849,6123437,6123637,6124115,6124331,6124798,6125492,6133106,6134207,
Nuak1NM_001382102chr3R+6090045613420761169866133217146090045,6116839,6117312,6117576,6117855,6118933,6122473,6123179,6123508,6123985,6124188,6125373,6129049,6133162,6090618,6117192,6117512,6117794,6118453,6120058,6122849,6123437,6123637,6124115,6124331,6125492,6133106,6134207,
Nuak1NM_001382104chr3R+6110329612863861169866128039146110329,6116839,6117312,6117576,6117855,6118933,6121060,6122473,6123179,6123508,6123985,6124188,6125373,6127683,6110452,6117192,6117512,6117794,6118453,6120058,6121801,6122849,6123437,6123637,6124115,6124331,6125492,6128638,
Pi4KIIalphaNM_001382052chr3R-138338113870851384016138636281383381,1384085,1384217,1385097,1385390,1385793,1386259,1386495,1384020,1384154,1385038,1385293,1385521,1385912,1386412,1387085,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.