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Database: dm3 Primary Table: all_est Row Count: 1,049,282 Data last updated: 2016-05-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 585 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 388 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 3 | int(10) unsigned | Number of bases that don't match |
| repMatches | 126 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | Number of bases inserted in target |
| strand | + | char(2) | + or - for strand. First character query, second target (optional) |
| qName | AA816352 | varchar(255) | Query sequence name |
| qSize | 517 | int(10) unsigned | Query sequence size |
| qStart | 0 | int(10) unsigned | Alignment start position in query |
| qEnd | 517 | int(10) unsigned | Alignment end position in query |
| tName | chr2L | varchar(255) | Target sequence name |
| tSize | 23011544 | int(10) unsigned | Target sequence size |
| tStart | 9844 | int(10) unsigned | Alignment start position in target |
| tEnd | 10361 | int(10) unsigned | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 517, | longblob | Size of each block |
| qStarts | 0, | longblob | Start of each block in query. |
| tStarts | 9844, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 388 | 3 | 126 | 0 | 0 | 0 | 0 | 0 | + | AA816352 | 517 | 0 | 517 | chr2L | 23011544 | 9844 | 10361 | 1 | 517, | 0, | 9844, |
| 585 | 387 | 0 | 22 | 0 | 0 | 0 | 0 | 0 | + | AA538811 | 412 | 3 | 412 | chr2L | 23011544 | 10794 | 11203 | 1 | 409, | 3, | 10794, |
| 585 | 600 | 4 | 0 | 0 | 0 | 0 | 2 | 2389 | - | AA439241 | 604 | 0 | 604 | chr2L | 23011544 | 15480 | 18473 | 3 | 231,160,213, | 0,231,391, | 15480,17052,18260, |
| 585 | 632 | 0 | 0 | 0 | 0 | 0 | 2 | 2389 | - | AA246243 | 632 | 0 | 632 | chr2L | 23011544 | 15539 | 18560 | 3 | 172,160,300, | 0,172,332, | 15539,17052,18260, |
| 585 | 497 | 0 | 0 | 0 | 0 | 0 | 2 | 2389 | - | AA540418 | 497 | 0 | 497 | chr2L | 23011544 | 15605 | 18491 | 3 | 106,160,231, | 0,106,266, | 15605,17052,18260, |
| 585 | 531 | 7 | 0 | 0 | 3 | 3 | 2 | 2389 | - | AA202743 | 541 | 0 | 541 | chr2L | 23011544 | 15609 | 18536 | 6 | 14,51,37,160,258,18, | 0,15,67,104,264,523, | 15609,15623,15674,17052,18260,18518, |
| 585 | 575 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA802028 | 579 | 0 | 579 | chr2L | 23011544 | 17940 | 18519 | 1 | 579, | 0, | 17940, |
| 585 | 576 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA802028 | 579 | 0 | 579 | chr2L | 23011544 | 20745 | 21324 | 1 | 579, | 0, | 20745, |
| 585 | 325 | 2 | 0 | 0 | 0 | 0 | 3 | 6733 | - | AA698361 | 327 | 0 | 327 | chr2L | 23011544 | 28880 | 35940 | 4 | 46,60,26,195, | 0,46,106,132, | 28880,28981,29042,35745, |
| 585 | 495 | 2 | 0 | 0 | 2 | 13 | 7 | 2680 | + | AA801728 | 510 | 0 | 510 | chr2L | 23011544 | 66720 | 69897 | 9 | 65,7,14,12,31,11,204,126,27, | 0,66,73,99,111,142,153,357,483, | 66720,66785,69458,69481,69494,69526,69538,69743,69870, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server