|
|---|
| |
Database: dm6 Primary Table: all_mrna Row Count: 114,843 Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
|---|
| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 24 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
| strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | AB293746 | varchar(255) | values | Query sequence name |
| qSize | 24 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 24 | int(10) unsigned | range | Alignment end position in query |
| tName | chr2L | varchar(255) | values | Target sequence name |
| tSize | 23513712 | int(10) unsigned | range | Target sequence size |
| tStart | 157 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 181 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 24, | longblob | | Size of each block |
| qStarts | 0, | longblob | | Start of each block in query. |
| tStarts | 157, | longblob | | Start of each block in target. |
|
| |
|
|
|
Connected Tables and Joining Fields
|
|
|
Sample Rows
|
|---|
| |
| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
|---|
| 585 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB293746 | 24 | 0 | 24 | chr2L | 23513712 | 157 | 181 | 1 | 24, | 0, | 157, |
| 585 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB296618 | 25 | 0 | 25 | chr2L | 23513712 | 157 | 182 | 1 | 25, | 0, | 157, |
| 585 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB296717 | 24 | 0 | 24 | chr2L | 23513712 | 298 | 322 | 1 | 24, | 0, | 298, |
| 585 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB293701 | 25 | 0 | 25 | chr2L | 23513712 | 298 | 323 | 1 | 25, | 0, | 298, |
| 585 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB293636 | 26 | 0 | 26 | chr2L | 23513712 | 298 | 324 | 1 | 26, | 0, | 298, |
| 585 | 27 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB293807 | 27 | 0 | 27 | chr2L | 23513712 | 298 | 325 | 1 | 27, | 0, | 298, |
| 585 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB296417 | 25 | 0 | 25 | chr2L | 23513712 | 445 | 470 | 1 | 25, | 0, | 445, |
| 585 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB293812 | 26 | 0 | 26 | chr2L | 23513712 | 445 | 471 | 1 | 26, | 0, | 445, |
| 585 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB293746 | 24 | 0 | 24 | chr2L | 23513712 | 615 | 639 | 1 | 24, | 0, | 615, |
| 585 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB296618 | 25 | 0 | 25 | chr2L | 23513712 | 615 | 640 | 1 | 25, | 0, | 615, |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
|
US Server