Schema for intronEst
  Database: dm6    Primary Table: intronEst    Row Count: 341,930   Data last updated: 2014-09-03
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 600int(10) unsigned range Number of bases that match that aren't repeats
misMatches 4int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 2389int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA439241varchar(255) values Query sequence name
qSize 604int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 604int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 23513712int(10) unsigned range Target sequence size
tStart 15480int(10) unsigned range Alignment start position in target
tEnd 18473int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 231,160,213,longblob   Size of each block
qStarts 0,231,391,longblob   Start of each block in query.
tStarts 15480,17052,18260,longblob   Start of each block in target.

Connected Tables and Joining Fields
        dm6.all_est.qName (via intronEst.qName)
      dm6.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856004000022389-AA4392416040604chr2L2351371215480184733231,160,213,0,231,391,15480,17052,18260,
5856320000022389-AA2462436320632chr2L2351371215539185603172,160,300,0,172,332,15539,17052,18260,
5854970000022389-AA5404184970497chr2L2351371215605184913106,160,231,0,106,266,15605,17052,18260,
5855317003322389-AA2027435410541chr2L235137121560918536614,51,37,160,258,18,0,15,67,104,264,523,15609,15623,15674,17052,18260,18518,
5853252000036733-AA6983613270327chr2L235137122888035940446,60,26,195,0,46,106,132,28880,28981,29042,35745,
585839100146258+AA9423628440844chr2L2351371267080681787427,194,129,50,4,19,17,0,427,621,754,804,808,827,67080,67568,67891,68085,68136,68141,68161,
585641100004252+AA9419276431643chr2L2351371267263681575178,65,194,132,73,1,179,244,438,570,67263,67442,67568,67891,68084,
585557100114210+AA5408425590559chr2L2351371294750955186142,82,170,140,4,20,0,142,224,394,535,539,94750,94988,95131,95353,95493,95498,
585460200003209+AA3920474700462chr2L235137129482495495468,82,170,142,0,68,150,320,94824,94988,95131,95353,
5855170000032353+AA9514125170517chr2L235137121079511108214150,222,78,67,0,150,372,450,107951,108587,110405,110754,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.