Schema for xenoRefFlat
  Database: dm6    Primary Table: xenoRefFlat    Row Count: 55,280   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Kif17varchar(255) values Name of gene as it appears in genome browser.
name NM_001190978varchar(255) values Name of gene
chrom chr3Lvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 5358123int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 5358993int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 5358123int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 5358993int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 5358123,5358555,5358660,535...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 5358516,5358630,5358819,535...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        dm6.xenoMrna.qName (via xenoRefFlat.name)
      dm6.xenoRefGene.name (via xenoRefFlat.name)
      dm6.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Kif17NM_001190978chr3L-535812353589935358123535899345358123,5358555,5358660,5358840,5358516,5358630,5358819,5358993,
IMP3NM_001243292chr2R+17518290175189401751829017518940317518290,17518386,17518754,17518359,17518425,17518940,
DNM3NM_001243284chrX+158930131590174715893013159017471015893013,15894690,15894830,15895722,15895852,15896158,15896426,15897100,15898954,15901561,15893148,15894753,15895601,15895779,15896074,15896302,15896437,15897238,15899047,15901747,
FECHNM_204196chr3R-31810757318120813181075731812081431810757,31810999,31811396,31811763,31810925,31811302,31811468,31812081,
pcsk1NM_001137662chrX+16376673163777201637667316377720516376673,16376913,16377126,16377429,16377549,16376787,16377009,16377372,16377483,16377720,
LOC100286342NM_001159229chr3L-16609571166101471660957116610147316609571,16609727,16610057,16609649,16609925,16610147,
PGM1NM_001172818chr3L-16126136161284661612613616128466816126136,16126340,16126589,16126685,16126853,16127456,16128098,16128412,16126226,16126526,16126658,16126826,16127234,16127564,16128263,16128466,
Fbxo11NM_001348248chr3R-980488898075969804888980759659804888,9805098,9806237,9806519,9807302,9805017,9806174,9806418,9806837,9807596,
TUBBNM_001293212chr2R-19447474194487461944747419448746119447474,19448746,
SORDNM_001293203chr3R+705312670541817053126705418127053126,7054139,7053588,7054181,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.