Schema for mrnaOrientInfo
  Database: droAna1    Primary Table: mrnaOrientInfo    Row Count: 48   Data last updated: 2017-10-16
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom 2444715varchar(255) values Reference sequence chromosome or scaffold
chromStart 3190int(10) unsigned range Start position in chromosome
chromEnd 3393int(10) unsigned range End position in chromosome
name EU362855varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 2smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droAna1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585244471531903393EU36285502000
585244484801295EU41744703000
58524451898161517EU36285500000
58524454170178EU36287201000
585244572021255357EU51446822000
585244587102394D3798901000
585244608702189EU59539912000
58524465790888EU685279000160
585244664536434026EU41744610000
585244664536434431EU41744713000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.