Schema for xenoRefSeqAli
  Database: droAna1    Primary Table: xenoRefSeqAli    Row Count: 284,592   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 140int(10) unsigned range Number of bases that match that aren't repeats
misMatches 19int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand ++char(2) values + or - for strand. First character query, second target (optional)
qName NR_073620varchar(255) values Query sequence name
qSize 1932int(10) unsigned range Query sequence size
qStart 353int(10) unsigned range Alignment start position in query
qEnd 512int(10) unsigned range Alignment end position in query
tName 2444683varchar(255) values Target sequence name
tSize 8781int(10) unsigned range Target sequence size
tStart 8500int(10) unsigned range Alignment start position in target
tEnd 8659int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 159,longblob   Size of each block
qStarts 353,longblob   Start of each block in query.
tStarts 8500,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droAna1.all_mrna.qName (via xenoRefSeqAli.qName)
      droAna1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droAna1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droAna1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58514019000000++NR_073620193235351224446838781850086591159,353,8500,
58514019000000++NR_12375053792450260924446838781850086591159,2450,8500,
5851026000000+-NM_001258497128085965607324446838781852086281108,5965,153,
5851026000000+-NM_14369297696032614024446838781852086281108,6032,153,
58516041000000++NM_00131665933942346254724447154589319233931201,2346,3192,
5858757000000+-NM_00130071346541011115524447318185523753811144,1011,2804,
585323100000011226+-NM_001021462778117540244473429007962445298,325,117,215,455,1779,
585315102000011226+-NM_00128110371337454244473429008022445298,319,37,135,455,1779,
58532199000011226+-NM_001099370937614812444734290080224482101,319,61,162,452,1779,
58532292000011226+-NM_0010469341112175589244473429008052445298,316,175,273,455,1779,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.