Schema for xenoRefSeqAli
  Database: droEre1    Primary Table: xenoRefSeqAli    Row Count: 264,309   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 77int(10) unsigned range Number of bases that match that aren't repeats
misMatches 37int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 24int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 33int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001275303varchar(255) values Query sequence name
qSize 8333int(10) unsigned range Query sequence size
qStart 7944int(10) unsigned range Alignment start position in query
qEnd 8082int(10) unsigned range Alignment end position in query
tName scaffold_1009varchar(255) values Target sequence name
tSize 1529int(10) unsigned range Target sequence size
tStart 1268int(10) unsigned range Alignment start position in target
tEnd 1415int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 42,72,longblob   Size of each block
qStarts 7944,8010,longblob   Start of each block in query.
tStarts 114,189,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droEre1.all_mrna.qName (via xenoRefSeqAli.qName)
      droEre1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droEre1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droEre1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585773700124133+-NM_001275303833379448082scaffold_1009152912681415242,72,7944,8010,114,189,
58523160000021073+-NM_001092605728185476scaffold_102613963113953261,4,26,185,446,450,1,318,1339,
67391440012881895++NM_1130032450340763scaffold_4784257653281162334811624378242,93,340,670,11623348,11624285,
6101921200011021105+-NM_00103594018766981112scaffold_478425765328332515633255732204,108,698,1004,22439755,22440064,
6101921200011021105+-NM_0013318921509453867scaffold_478425765328332515633255732204,108,453,759,22439755,22440064,
58520358000000+-NM_001247289745220481scaffold_10261396113413951261,220,1,
58523862000000++NM_003520542174474scaffold_32212353917289175891300,174,17289,
67910848000000+-NM_1293101901220376scaffold_47842576532812410265124104211156,220,13354907,
10164640013032382252++NM_00132842618336841215scaffold_4690187502511018881510571295399,96,33,684,783,1182,10188815,10188981,10571262,
5851565100136136++NM_183290314217501993scaffold_10261396113513782129,78,1750,1915,1135,1300,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.