Schema for xenoRefFlat
  Database: droPer1    Primary Table: xenoRefFlat    Row Count: 259,434   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CG8788varchar(255) values Name of gene as it appears in genome browser.
name NM_001299302varchar(255) values Name of gene
chrom super_31varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 305880int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 308159int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 306246int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 307418int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 13int(10) unsigned range Number of exons
exonStarts 305880,306066,306122,306221...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 306018,306106,306172,306229...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droPer1.xenoMrna.qName (via xenoRefFlat.name)
      droPer1.xenoRefGene.name (via xenoRefFlat.name)
      droPer1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CG8788NM_001299302super_31-30588030815930624630741813305880,306066,306122,306221,306242,307191,307277,307379,307475,307602,307667,308039,308140,306018,306106,306172,306229,306259,307241,307297,307430,307582,307638,307690,308087,308159,
CG8172NM_001299293super_4+6665860666806466672006667837126665860,6665900,6666013,6666063,6666140,6666392,6666473,6666566,6666936,6667182,6667621,6667996,6665890,6665935,6666024,6666080,6666209,6666434,6666554,6666668,6667113,6667563,6667849,6668064,
FN3KNM_022158super_22-5141818173008173008173002514181,817242,514211,817300,
wnt8aNM_130946super_1-224738922492312249231224923122247389,2249090,2247503,2249231,
GIGYF2NM_001103148super_5-668846967345636688469673456346688469,6690133,6734332,6734542,6688484,6690160,6734354,6734563,
GIGYF2NM_001103148super_33+3881894355863881894355865388189,388514,435114,435215,435572,388216,388524,435142,435220,435586,
GIGYF2NM_001103147super_0+7824012016778240120167378240,119874,120138,78274,119893,120167,
zgc:173816NM_001109866super_8+307258230726813072582307268113072582,3072681,
Gpb5NM_001110865super_16+3734923738823734923738821373492,373882,
CG30275NM_001144266super_2+4262672426724442626724263778204262672,4262801,4262918,4262947,4263050,4263313,4263433,4263678,4264143,4264387,4264582,4265150,4265355,4265675,4265771,4266146, ...4262765,4262881,4262921,4263008,4263221,4263406,4263618,4263778,4264275,4264531,4264948,4265297,4265571,4265714,4266050,4266187, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.