Schema for xenoMrna
  Database: droSim1    Primary Table: xenoMrna    Row Count: 4,635,848   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 184int(10) unsigned Number of bases that match that aren't repeats
misMatches 78int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 529int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 123992int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JO009672varchar(255) Query sequence name
qSize 5525int(10) unsigned Query sequence size
qStart 3663int(10) unsigned Alignment start position in query
qEnd 4454int(10) unsigned Alignment end position in query
tName chr2Lvarchar(255) Target sequence name
tSize 22036055int(10) unsigned Target sequence size
tStart 9612int(10) unsigned Alignment start position in target
tEnd 133866int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 240,22,longblob Size of each block
qStarts 3663,4432,longblob Start of each block in query.
tStarts 21902189,22026421,longblob Start of each block in target.

Connected Tables and Joining Fields
        droSim1.all_est.qName (via xenoMrna.qName)
      droSim1.all_mrna.qName (via xenoMrna.qName)
      droSim1.xenoRefFlat.name (via xenoMrna.qName)
      droSim1.xenoRefGene.name (via xenoMrna.qName)
      droSim1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73184780015291123992+-JO009672552536634454chr2L2203605596121338662240,22,3663,4432,21902189,22026421,
73184780015291123992+-JO009673548836264417chr2L2203605596121338662240,22,3626,4395,21902189,22026421,
585301570041893146+-BT001900235115232070chr2L220360551283113335668,21,45,93,64,67,1523,1591,1633,1683,1779,2003,22022720,22022789,22022820,22022865,22022958,22023157,
58543543150011405153772+-X054265269135087chr2L2203605516560250012232,124,142,160,24,751,1192,106,643,443,109,229,51,64,39,61,57,41,146,67,53,135,13,45,177,319,479,504,1255,2447,2553,3196,3639,3748,3984,4036,4101,4162,4460,4517,4573,4776,4844,4952,22011054,22011087,22011211,22012354,22013912,22013940,22014749,22015998,22016669,22017384,22018089,22018261,22018490,22018566,22 ...
585438727502611438143657+-BT100228531505126chr2L2203605516569249141963,142,162,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,78,359,521,1300,2492,2598,3241,3684,3793,4074,4199,4379,4544,4621,4823,4879,4892,5000,22011141,22011211,22012352,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22018946,22 ...
58539222120266254133751+-BT100129444014415chr2L2203605517090250011432,117,132,779,1192,106,643,443,109,280,103,61,145,18,1,33,236,373,1152,2344,2450,3093,3536,3645,3926,4051,4231,4397,22011054,22011087,22012353,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22018947,
58539972190264157133558+-JV213333442714400chr2L2203605517186249861417,117,142,160,779,1192,106,643,443,109,280,103,61,90,1,18,150,292,452,1231,2423,2529,3172,3615,3724,4005,4130,4310,22011069,22011087,22011211,22012354,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,
585395320800338123548+-AY051654439304199chr2L2203605517286249951326,117,142,160,779,1192,106,643,443,109,280,103,61,0,26,158,300,460,1239,2431,2537,3180,3623,3732,4013,4138,22011060,22011087,22011211,22012354,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,
5853344143000072475+-FJ6346793518153502chr2L220360551766423626885,779,1192,106,643,443,109,130,15,100,879,2071,2177,2820,3263,3372,22012429,22013912,22014749,22015998,22016669,22017384,22018089,22018261,
5853315143001572504+-KX8062403494153478chr2L220360551766423626856,779,1192,106,643,443,109,130,15,76,855,2047,2153,2796,3239,3348,22012429,22013912,22014749,22015998,22016669,22017384,22018089,22018261,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.