Schema for xenoRefFlat
  Database: droYak2    Primary Table: xenoRefFlat    Row Count: 173,200   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC100161367varchar(255) values Name of gene as it appears in genome browser.
name NM_001293406varchar(255) values Name of gene
chrom chr3Lvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 12558576int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 12558936int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 12558576int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 12558936int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 12558576,12558807,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 12558801,12558936,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droYak2.xenoMrna.qName (via xenoRefFlat.name)
      droYak2.xenoRefGene.name (via xenoRefFlat.name)
      droYak2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC100161367NM_001293406chr3L+12558576125589361255857612558936212558576,12558807,12558801,12558936,
LOC100164683NM_001293396chr2L+12895281128957971289528112895797212895281,12895587,12895554,12895797,
LOC100169546NM_001293395chr3R-956416495648179564164956481729564164,9564748,9564677,9564817,
LOC100162386NM_001293404chrX-10342688103446831034268810344683210342688,10344629,10343111,10344683,
WDR48NM_001303403chr2R+196895119712401968951197124071968951,1969104,1969169,1969261,1970020,1970549,1971171,1969077,1969167,1969172,1969744,1970233,1970594,1971240,
LOC100164935NM_001293392chr3R+26513907265143822651390726514382226513907,26514097,26514039,26514382,
WDR48NM_001303402chr2R+196895119712401969073197124051968951,1969237,1970020,1970549,1971171,1969077,1969744,1970233,1970594,1971240,
LOC100159302NM_001293391chr2L-16685033166858611668503316685861316685033,16685264,16685357,16685234,16685318,16685861,
rpl10NM_001303391chr3L-23689974236905072368997423690507223689974,23690202,23690137,23690507,
LOC100162628NM_001293390chr2R-656806065682946568060656829416568060,6568294,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.