Schema for xenoRefFlat
  Database: enhLutNer1    Primary Table: xenoRefFlat    Row Count: 324,085   Data last updated: 2020-02-05
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Gm41341varchar(255) values Name of gene as it appears in genome browser.
name NR_155443varchar(255) values Name of gene
chrom QQQE01000002v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 12926int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 13209int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 13209int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 13209int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 12926,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 13209,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        enhLutNer1.xenoRefGene.name (via xenoRefFlat.name)
      enhLutNer1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Gm41341NR_155443QQQE01000002v1-12926132091320913209112926,13209,
LINC01591NR_026706QQQE01000002v1-1048321487211487211487213104832,110049,148624,104877,110100,148721,
LINC01591NR_120396QQQE01000002v1-1048321487211487211487213104832,110049,148624,104877,110100,148721,
CBX3NM_016587QQQE01000251v1-1340302134260613419901342532131340302,1340538,1340601,1340635,1340677,1341189,1341377,1341454,1341713,1341988,1342174,1342203,1342367,1340421,1340571,1340623,1340666,1340761,1341216,1341400,1341480,1341794,1342158,1342201,1342367,1342606,
Mir30dNR_130420QQQE01000002v1+4455254456084456084456081445525,445608,
Mir30dNR_029718QQQE01000002v1+4455284456084456084456081445528,445608,
Mir30dNR_031842QQQE01000002v1+4455284456084456084456081445528,445608,
MIR30DNR_129140QQQE01000002v1+4455284456084456084456081445528,445608,
mir30dNR_129954QQQE01000002v1+4455294456124456124456121445529,445612,
MIR30DNR_035380QQQE01000002v1+4455324456084456084456081445532,445608,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.