Schema for all_mrna
  Database: eriEur1    Primary Table: all_mrna    Row Count: 46   Data last updated: 2017-06-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 310int(10) unsigned range Number of bases that match that aren't repeats
misMatches 14int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 87int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF339162varchar(255) values Query sequence name
qSize 6984int(10) unsigned range Query sequence size
qStart 3100int(10) unsigned range Alignment start position in query
qEnd 3424int(10) unsigned range Alignment end position in query
tName scaffold_100581varchar(255) values Target sequence name
tSize 994int(10) unsigned range Target sequence size
tStart 403int(10) unsigned range Alignment start position in target
tEnd 814int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 147,177,longblob   Size of each block
qStarts 3100,3247,longblob   Start of each block in query.
tStarts 403,637,longblob   Start of each block in target.

Connected Tables and Joining Fields
        eriEur1.mrnaOrientInfo.name (via all_mrna.qName)
      eriEur1.xenoRefGene.name (via all_mrna.qName)
      eriEur1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585310140000187+AF339162698431003424scaffold_1005819944038142147,177,3100,3247,403,637,
5856422400000+AF339162698434223512scaffold_122565203414741564190,3422,1474,
5851400600000+U33170920967826928scaffold_1620159343234691146,6782,323,
5851915010000-AF339162698427352932scaffold_1621732103188020771197,4052,1880,
5857460400054439-JF5104777500750scaffold_204204615239055796110,139,119,48,76,258,0,110,249,368,416,492,390,1359,1935,4719,4916,5321,
58539010650114523682-AF339162698414612071scaffold_225598528699551423181,139,145,4913,5239,5378,995,3276,4997,
5851231000000-AF3391626984123247scaffold_2273445447472248461124,6737,4722,
58537714600021081-AF134826889464888scaffold_2302275603408955943156,126,142,1,157,283,4089,5015,5452,
5851460000000+U33170920984568602scaffold_2464315343486650121146,8456,4866,
5857132613500019-AF13482688914888scaffold_2506441801513110139932381,493,1,382,13110,13500,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.