Schema for xenoRefFlat
  Database: eriEur1    Primary Table: xenoRefFlat    Row Count: 935,974   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName FBXO30varchar(255) Name of gene as it appears in genome browser.
name NM_001348092varchar(255) Name of gene
chrom scaffold_209017varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 345int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 431int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 431int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 431int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 345,longblob Exon start positions (or end positions for minus strand item)
exonEnds 431,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        eriEur1.xenoRefGene.name (via xenoRefFlat.name)
      eriEur1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
FBXO30NM_001348092scaffold_209017-3454314314311345,431,
TCTE1NM_001283410scaffold_239290-888134288813421888,1342,
TCTE1NM_001283410scaffold_321786+522954805229548025229,5381,5317,5480,
RAB40ALNM_001198704scaffold_245500-104139231041392331041,1703,3861,1122,1761,3923,
RAB40ALNM_001198704scaffold_340737+41161412924116341292141161,41292,
tcf7l1.SNM_001087469scaffold_374325+8243920947782439209477482439,82502,82609,209341,82469,82535,82611,209477,
rfng.LNM_001087470scaffold_100626-2026942026942202,622,274,694,
foxc1-ANM_001087468scaffold_187475+6089416099414608,877,902,910,876,901,909,941,
Tubgcp4NR_077245scaffold_293772+6693284328432842669,3082,757,3284,
Tubgcp4NR_077245scaffold_378027-337148513485134851383371,4332,6050,8671,8976,9235,40274,48424,3808,4354,6185,8801,8981,9465,40405,48513,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.