Schema for all_mrna
  Database: eriEur2    Primary Table: all_mrna    Row Count: 13   Data last updated: 2017-06-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 628smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 750int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 4388int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName JF510477varchar(255) values Query sequence name
qSize 750int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 750int(10) unsigned range Alignment end position in query
tName JH835297varchar(255) values Target sequence name
tSize 10989404int(10) unsigned range Target sequence size
tStart 5661770int(10) unsigned range Alignment start position in target
tEnd 5666908int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 258,76,48,119,139,110,longblob   Size of each block
qStarts 0,258,334,382,501,640,longblob   Start of each block in query.
tStarts 5661770,5662357,5662582,566...longblob   Start of each block in target.

Connected Tables and Joining Fields
        eriEur2.mrnaOrientInfo.name (via all_mrna.qName)
      eriEur2.xenoRefGene.name (via all_mrna.qName)
      eriEur2.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6287500000054388+JF5104777500750JH83529710989404566177056669086258,76,48,119,139,110,0,258,334,382,501,640,5661770,5662357,5662582,5665244,5665800,5666798,
5895864001449417+AF2519406300594JH8354234574935643960653967584,125,136,115,130,0,84,209,345,464,643960,645558,649135,653719,653837,
5895864001449417+AJ2772906300594JH8354234574935643960653967584,125,136,115,130,0,84,209,345,464,643960,645558,649135,653719,653837,
5982163400001642797+U33171274502167JH8354414092782173672117816851786,136,107,115,140,121,119,163,146,166,179,149,94,121,75,141,109,0,86,222,329,444,584,705,824,987,1133,1299,1478,1627,1721,1842,1917,2058,1736721,1743040,1744197,1748583,1749944,1752499,1755021,1757808,1759062,1761102,1766477,1768187,1772126,1774800,1777096,1778313, ...
58685122100067383+AF13482688914888JH8354813825839176955185212736,152,112,153,139,126,156,14,50,202,314,467,606,732,176955,179852,181783,183070,183710,184160,185056,
594661100001715+FJ455494966303965JH8355383058461125654812579252427,235,303,730,1256548,1257690,
594715200001151+FJ4554737170717JH8355383058461126295112638192547,170,0,547,1262951,1263649,
735628803910482953-FJ45549496613168JH83554332595653658858489841213,29,8,11,11,11,11,3,13,14,5,17,798,811,840,848,866,878,889,900,903,916,930,936,365885,365931,365997,474487,502655,517684,615950,615996,733468,827484,848962,848967,
5855561001213015+U33171274521632722JH836190714705225058223148,214,195,2163,2311,2527,2250,5413,5627,
7367671612310174797239-AF3391626984166984JH8361907147052972134014134827,70,198,187,188,147,115,137,235,140,208,162,150,219,257,120,127,197,137,98,131,216,88,176,144,171,196,102,102,177,169,116,178, ...0,27,97,295,482,670,817,932,1069,1304,1451,1659,1821,1971,2190,2447,2567,2694,2891,3028,3126,3257,3473,3561,3737,3881,4052,4248, ...297213,299165,300269,300654,302472,303717,304295,306697,307127,310329,310532,311655,312212,314097,315835,316246,316836,317077,31 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.