Schema for xenoRefFlat
  Database: eriEur2    Primary Table: xenoRefFlat    Row Count: 315,055   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Cpne5varchar(255) values Name of gene as it appears in genome browser.
name NM_001107616varchar(255) values Name of gene
chrom JH835367varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 5243876int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 5364110int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 5243897int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 5364110int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 21int(10) unsigned range Number of exons
exonStarts 5243876,5264144,5265164,527...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 5243992,5264184,5265211,527...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        eriEur2.xenoRefGene.name (via xenoRefFlat.name)
      eriEur2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Cpne5NM_001107616JH835367+5243876536411052438975364110215243876,5264144,5265164,5278217,5296256,5296534,5298862,5301586,5323641,5329694,5340278,5342623,5349917,5353523,5358054,5359767, ...5243992,5264184,5265211,5278321,5296296,5296611,5298922,5301650,5323745,5329799,5340316,5342707,5349967,5353585,5358101,5359949, ...
RUNX2NM_001278478JH835780+8767661040675877078103678236876766,876896,877049,877266,887884,896122,971298,995175,1036303,1036873,1037001,1037022,1037074,1037266,1037325,1037413,1037503, ...876830,876953,877183,877423,888039,896229,971472,995337,1036837,1036986,1037013,1037061,1037208,1037279,1037403,1037434,1037581, ...
Pomgnt2NM_001289560JH836385+3326383343963326473343903332638,332800,334141,332764,334098,334396,
Pomgnt2NM_001289559JH836385+3326383343963326473343903332638,332800,334141,332764,334098,334396,
Slc25a25NM_001290558JH835689+1981729199170219817331990471151981729,1984098,1984320,1985230,1987001,1988931,1989341,1989540,1990043,1990286,1990533,1991098,1991228,1991339,1991555,1981889,1984225,1984408,1985342,1987160,1989088,1989445,1989708,1990194,1990473,1990585,1991124,1991238,1991358,1991702,
CYRIBNM_001353296JH835473+2039097209907220823052098403142039097,2058327,2069508,2073849,2079888,2082305,2087410,2088217,2091076,2092629,2098339,2098524,2098836,2098972,2039130,2058410,2069638,2073955,2080025,2082382,2087524,2088301,2091203,2092700,2098515,2098809,2098962,2099072,
rwdd1NM_001002535JH836107+31753321163175332116131753,32116,
Lix1NM_001046788JH835412+330188333023753301883330237523301883,3302135,3302108,3302375,
Gm21297NM_001384261JH836003+813697117124081369711712407813697,844952,958421,958838,959280,1073290,1170183,813817,845021,958562,959112,959319,1073711,1171240,
PKN2NM_006256JH836258+32416838360732416838128134324168,324315,332217,336305,337261,337488,347895,349355,356822,357273,358092,358484,359533,360053,360201,366288,371451,372433,37 ...324276,324463,332378,336423,337407,337700,348083,349465,356966,357349,358263,358609,359668,360129,360293,366465,371514,372510,37 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.