Schema for estOrientInfo
  Database: felCat9    Primary Table: estOrientInfo    Row Count: 1,052   Data last updated: 2018-03-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 902smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrB4varchar(255) values Reference sequence chromosome or scaffold
chromStart 41632231int(10) unsigned range Start position in chromosome
chromEnd 41633445int(10) unsigned range End position in chromosome
name AF034791varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 59smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat9.all_est.qName (via estOrientInfo.name)
      felCat9.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
902chrB44163223141633445AF034791559000
864chrX3658147636589121AF19797056000
13chrX3669984236700290AF1979690110300
631chrA160835676083951AW646939000010
654chrA191214229121858AW64675500000
806chrA12900327029011858AW64692450000
954chrA14837785148378338AW64675400000
976chrA15125631851256629AW64675300000
1230chrA18461818584623042AW64676650000
1284chrA19163902391640124AW646765-200021

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.