Schema for xenoRefFlat
  Database: felCat9    Primary Table: xenoRefFlat    Row Count: 220,244   Data last updated: 2019-04-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CTRB1varchar(255) values Name of gene as it appears in genome browser.
name NM_001105330varchar(255) values Name of gene
chrom chrE2varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 51835628int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 51840231int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 51835631int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 51840228int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 8int(10) unsigned range Number of exons
exonStarts 51835628,51836144,51837421,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 51835793,51836278,51837602,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        felCat9.xenoMrna.qName (via xenoRefFlat.name)
      felCat9.xenoRefGene.name (via xenoRefFlat.name)
      felCat9.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CTRB1NM_001105330chrE2-51835628518402315183563151840228851835628,51836144,51837421,51837852,51837992,51838033,51838226,51840174,51835793,51836278,51837602,51837930,51837994,51838112,51838328,51840231,
ACBD5NM_001352581chrB4+250224862506882525022648250668842025022486,25022847,25027848,25029860,25038929,25039141,25043144,25045546,25049080,25053877,25061578,25061936,25066871,25067563,25 ...25022663,25023019,25027969,25029933,25039044,25039174,25043279,25045651,25049348,25054077,25061595,25062052,25067401,25067950,25 ...
PPGRP-SNM_213737chrA1+90188922119020792201390188,91109,91997,90230,91203,92211,
PGLYRP4NM_001244284chrA1+90188101902902071014001290188,91109,91997,93602,94964,96654,100055,101218,101641,101687,101805,101876,90230,91209,92197,93721,95117,96853,100171,101528,101670,101711,101856,101902,
LRRC32NM_001131274chrD1+57649403576631035765433757661032657649403,57654333,57654403,57659127,57662898,57662976,57649515,57654388,57654424,57661039,57662962,57663103,
LOC542146NM_001111771chrB4-1344361871344460441344361871344460447134436187,134440588,134443013,134443172,134443691,134443788,134445945,134436385,134440600,134443085,134443333,134443761,134443830,134446044,
FAM49BNM_001353255chrF2-740656177421421374066414740971781374065617,74065930,74071761,74073263,74074714,74075896,74078123,74079484,74085537,74090304,74097105,74119609,74214125,74065877,74066478,74071832,74073390,74074794,74076017,74078197,74079621,74085643,74090426,74097188,74119651,74214213,
AKT1NM_173986chrB3-14872427714874253514872433414874253415148724277,148724326,148724660,148726251,148726884,148727182,148727381,148727699,148729209,148729344,148729600,148729914,14873229 ...148724304,148724414,148724763,148726341,148727097,148727311,148727507,148727768,148729275,148729476,148729748,148730024,14873229 ...
IFNGNM_174086chrB4-95328890953341259532950295332718895328890,95329298,95329487,95332369,95332485,95332649,95334039,95334085,95329267,95329399,95329638,95332482,95332554,95332718,95334075,95334125,
Il18NM_008360chrD1-10129153101475321012915310138161610129153,10132782,10133730,10133778,10138107,10147496,10129283,10132905,10133763,10133805,10138161,10147532,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.